Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04163 atgTCTGTGAATGGAAGAGTTTCTGGTTCAAATGGAAgattgtcatcatcaaaaatcaagTCTTGGAAAGGAAATGAGTCTTTGCATGTTTCTAATTCTGGTAAAACATGTAGGTGGAAACTGTTTCTGTTTTGGgtttttggtgttgttgtttcCATAGGGAGTGTTTGGTTTATCTTTAGTAGTTTCAATAGTAAGCATTTGAGTAATGAATCAGCTTGTGAAAAGAGTACACAAACATTGCTACAACGTTACAATGTTAGTAGGAAACAGCTTCATGCTTTGGCTTCTTTGTTCTCTGGATCAGATCAGATTTTGTCGAATTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAGTGGCATAATCAACACTCCTCCACAGTCTATGTGTCTAAAGAATCAGGAGTTTCAAAAGGAGCATAGATATGTTGCAGAATCTATAGAACAATGCCCTATTCTTGATGATTTTGTTCATACAAGGCTTGGATTATCATTCCCTTGGAAAACATATGTAACATTGGACTCTGCACTTTTGACCAATTGGTTTAATGTTTTGCTCTGTGGAAAGGTGCTGCTGGGTCCTTATTGGAATTATACTGTCAATTTATCTAGTTTAGTTAAAGGATGCTGTTGGGTTCTTATTGGAATTATACTGTTCCACAAGTTGTCTGGCTTTTGTTTACCACGGAAGAGTCAAAAGCAGAAGGTATTTAAGAAGCTTCCAGCTGCTCAACAAAAGCGGATTCAACATTCTATGCACGGTCATTCAAAGGCTTCTGGGCGGTGGAGAAAAAAGCTGCTAGTTATTTTTCTGTTATTTGGAATCTTTGGCTCTGCATGTTTATTTTGGTACATGAGTTCAGACATTGCGCAAAGAAGAGTAGAAATGCTTTCCACTATGTGCGATGAGCGAGCCCGAATGCTGCAAGATCAATTTAACGTGAGCATGAATCATGTCCATGCTCTCGCTATTCTTGTGTCTACATTTCACCATGGTAAACATCCTTCCGCAGTTGACCAGAATATTTTTGGAAAATATACCGAGAGTTCGGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTGCATTCTGATAGGGTGCATTTTGAGAAGCAGCACGGATGGACAATTAAGAATATGGAAGCCGAGAACGAGGCATTAGTTCAAGATTGTATTCCAGAAAACTTGGATCCGGCGCCCATTCAAGATGAATATGCACCAGTCATATTTGCTCAAGAAACAGTCTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGCGAGCAAGGGCATCCGGGAAAGGTGTTCTGACGTCCCCTTTTAAACTACTAAAGTCCAATCACCTAGGTGTTGTACTTACATTTGCTGTCTATAACTCTGAACTTCCTCCTAATGCTACACCCGATCAGCGTATTGAAGCTACTGCGGGGTATCTTGGTGCATCTTATGATGTTCCATCACTCGTGGACAAACTTCTTCACCAACTTGCCAGCAAGCAAACCATTGTTGTGAATGTTTATGACACAACTAATGCATCTGCACCTATTACAATGTATGGTACTGATGTTATTGATACTGGCTTACTACACATAAGTGGTCTGGATTTTGGGGATCCGCTACGTAAACATGAGATGCACTGCCGGTTCAAGCATAGGCCTCAGTTACCTTGGACACCAATCTATGTATCTGCGGGGGTATTTGCTATTACCTTTCTTCTGGGATATATATTTCATGCAGCAATAAATCAAATAGCTAAAGTGGAGGATGACTATCGTCAAATGAGAGAGCTCTTAGTTCGTGCTGAAGCTGCTGATGTCGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGACAGTCAGATGGATTTTGCCCAAACTGCTCACACGAGTGGTAAAGATCTTATATCGGTCATAAACGAAGTTCTCTATCAAGCTAAGATTGAGGCAGGCAAACTTGAACTTGAAGCTGTAGCTTTTCATCCACAAGCTATTCTAGATGAAGTTCTATCACTTTTCTCTGAAAAGGCCAATGAAAAAGGAATTGAGTTGGCTGTTTATGTATCCAACCAAGTACCTCAAGTTGTCATTGGCGACCCTAAACGCTTCAGGCAAATAATTGCCAATCTTGTTGGCAATTCACTTAAGTTCACTCATGATAAAGGACATGTTTTTGTCTCGATTCATCTGGCAAAAGAAGTGAAGAATCCACATGATATCACGGATGCAGTGCTAAGAGAAGGCTTAATGAATCAGGACATATCAGAAAGAGCATGTAATAATACATTGAGTGGATTTCCGGTAGTTAACAGATGGAAAAGCtgggaaaattttaaaaagttatatttgaTGGATGAGTCGGAAACTATTCAACTACTTGTAACTGTTGAGGACACTGGTATAGGAATTCCTACCGATGCACAAAGCCGCATATTCACACCTTTCATGCAGGCTGATAGTTCCACATCCAGAACATACGGTGGAACTGGAATAGGATTAAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGCGAGCCAAAAATTGGAAGTACTTTTTCATTCACCGGAAATTTCAGGAAAGGAGAAACCAAATCTCTGGATGAAAAGTGGCAGCAGAAGTACAATCCTTTTGTCTCCGAGTTCCGAGGTTTGAAAGCATTAGTGATAGATCGAAGAAAAATCCGTGCCGAGGTTACAAGATATCACCTGCAAAGGTTAGGGATGTCCGTGGATGTTAATTCCAGTCTTCAATCTGCATGCTTTTGTCTATCTGATACTTGCAACTCAAgTATGTCAAGGCAGTTGGCCATGATTCTTATAGACAAGGACTCCTCGGACAACGAAAGTAGCATCTTATATGCAATCAAGAAACAAAGACAAAATGGCATCAAAGAGGACACATTAAACTTTCCAAAGATTTTTCTCCTGGCCACCGATCTTAGCCATAGTGAACGCAACGAGTTGAAGTCGGCTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGCTAAGTGTTCTGATTCAGTACTACAGAGAGAAAGTATTCAAACTTGGAAATTTATTAATACAGAAACGGATTTTGGTGGTTGATGATAATGCAGTAAACAGAAAAGTCGCTGAAGGTGTTCTGCGGAAATATGGGGCAGTAGTTACATGTGTTGATGGGGGTAAGACTGCTCTAAAGATGCTTAAACCACCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCGGAAATGGACGGTTTTGAGGTGACGAGGCAAATCCGCTATATGGAGAACGAggtaaatgaaaaaattactagtGGGGAAGCATTGGTGGAGATGTTTGGGAATGTTTCTTATTGGCACATTCCAATACTAGCTATGACAGCTGATGTAACTCAAGCATCAAATGAAGAATGCAAAATATGTGGGATGGATGACTATGTGTCAAAGCCATTTGAAGAAGATCAACTCTATATGGCAGTCGCACGTGTTTTCAATTTCGGTTCATAG 3630 0.3931 MSVNGRVSGSNGRLSSSKIKSWKGNESLHVSNSGKTCRWKLFLFWVFGVVVSIGSVWFIFSSFNSKHLSNESACEKSTQTLLQRYNVSRKQLHALASLFSGSDQILSNCIDERRLQMLLSSGIINTPPQSMCLKNQEFQKEHRYVAESIEQCPILDDFVHTRLGLSFPWKTYVTLDSALLTNWFNVLLCGKVLLGPYWNYTVNLSSLVKGCCWVLIGIILFHKLSGFCLPRKSQKQKVFKKLPAAQQKRIQHSMHGHSKASGRWRKKLLVIFLLFGIFGSACLFWYMSSDIAQRRVEMLSTMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAVDQNIFGKYTESSAFERPLTSGVAYALKVLHSDRVHFEKQHGWTIKNMEAENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNSELPPNATPDQRIEATAGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVIDTGLLHISGLDFGDPLRKHEMHCRFKHRPQLPWTPIYVSAGVFAITFLLGYIFHAAINQIAKVEDDYRQMRELLVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDSQMDFAQTAHTSGKDLISVINEVLYQAKIEAGKLELEAVAFHPQAILDEVLSLFSEKANEKGIELAVYVSNQVPQVVIGDPKRFRQIIANLVGNSLKFTHDKGHVFVSIHLAKEVKNPHDITDAVLREGLMNQDISERACNNTLSGFPVVNRWKSWENFKKLYLMDESETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPKIGSTFSFTGNFRKGETKSLDEKWQQKYNPFVSEFRGLKALVIDRRKIRAEVTRYHLQRLGMSVDVNSSLQSACFCLSDTCNSSMSRQLAMILIDKDSSDNESSILYAIKKQRQNGIKEDTLNFPKIFLLATDLSHSERNELKSAGIIDDILMKPLWLSVLIQYYREKVFKLGNLLIQKRILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKTALKMLKPPHNFDACFMDLQMPEMDGFEVTRQIRYMENEVNEKITSGEALVEMFGNVSYWHIPILAMTADVTQASNEECKICGMDDYVSKPFEEDQLYMAVARVFNFGS 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04163 1209 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 607 687 IPR036097 GO:0000155|GO:0007165
Tsu05g04163 1209 SUPERFAMILY CheY-like 1067 1206 IPR011006 -
Tsu05g04163 1209 ProSiteProfiles CHASE domain profile. 336 560 IPR006189 -
Tsu05g04163 1209 Pfam Response regulator receiver domain 1069 1201 IPR001789 GO:0000160
Tsu05g04163 1209 Gene3D - 287 339 - -
Tsu05g04163 1209 Gene3D - 63 102 - -
Tsu05g04163 1209 Gene3D - 1063 1207 - -
Tsu05g04163 1209 PRINTS Bacterial sensor protein C-terminal signature 862 880 IPR004358 GO:0016310|GO:0016772
Tsu05g04163 1209 PRINTS Bacterial sensor protein C-terminal signature 827 841 IPR004358 GO:0016310|GO:0016772
Tsu05g04163 1209 PRINTS Bacterial sensor protein C-terminal signature 845 855 IPR004358 GO:0016310|GO:0016772
Tsu05g04163 1209 ProSiteProfiles Response regulatory domain profile. 1068 1205 IPR001789 GO:0000160
Tsu05g04163 1209 Pfam His Kinase A (phospho-acceptor) domain 621 686 IPR003661 GO:0000155|GO:0007165
Tsu05g04163 1209 ProSiteProfiles Histidine kinase domain profile. 628 902 IPR005467 -
Tsu05g04163 1209 SUPERFAMILY CheY-like 922 1053 IPR011006 -
Tsu05g04163 1209 CDD REC_hyHK_CKI1_RcsC-like 1069 1201 - -
Tsu05g04163 1209 SMART REC_2 1067 1201 IPR001789 GO:0000160
Tsu05g04163 1209 ProSiteProfiles Response regulatory domain profile. 927 1057 IPR001789 GO:0000160
Tsu05g04163 1209 CDD HATPase_EvgS-ArcB-TorS-like 738 897 - -
Tsu05g04163 1209 CDD HisKA 621 682 IPR003661 GO:0000155|GO:0007165
Tsu05g04163 1209 PANTHER HISTIDINE KINASE 2 251 1206 - -
Tsu05g04163 1209 Gene3D CHASE domain 340 567 IPR042240 -
Tsu05g04163 1209 SMART HKATPase_4 733 902 IPR003594 -
Tsu05g04163 1209 Pfam CHASE domain 339 533 IPR006189 -
Tsu05g04163 1209 SMART CHASE_2 336 535 IPR006189 -
Tsu05g04163 1209 PANTHER TWO-COMPONENT HISTIDINE KINASE 251 1206 - -
Tsu05g04163 1209 SMART HisKA_10 621 686 IPR003661 GO:0000155|GO:0007165
Tsu05g04163 1209 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 675 897 IPR036890 -
Tsu05g04163 1209 Gene3D - 685 903 IPR036890 -
Tsu05g04163 1209 Coils Coil 598 618 - -
Tsu05g04163 1209 Gene3D - 590 684 - -
Tsu05g04163 1209 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 733 897 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04163 Tsu-Chr5 52254845 52262012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04163 41 1205 Miscellaneous Gene Families AT5G35750 57.943 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g04163 CHASE 1.1e-32 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04163 K14489 - gmx:100805107 1749.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04163 05 52254845 52262012 Tsu05g04163 05 52254845 52262012 ECH