Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04160 ATGCTCCCTCCGCGACAGCAGTCCCGGGTTGGAGGTCTCCAAACATCGCTATCTCTGGTTTCTTCGGATCCTCGCTTGTCTCCAGAGGATCCTAGGTCAAACTCTGATAACCTCCGGGAATCTCCTACTGAAAGTGCTAGCTCTAGAGAAACCTGGCCTACTGCTGATGCAATTGCTGCGAAGAAGATGGAGAATGGAAAAGCTGATATTGATTGTCCTGATCAGTCAGTTATTCGTCATGTTTCCAGTGCGGATAGAATAAGTCTTCAGGATATTGCTAGAGAAAGAGTGGATGTGATATGTGACAAAATGCACCGTCTACCTGACCAGTTTCTAGATGAGCTAAAAAATGGGCTTCGACTTATACTTGAGGGAGGAAATGGCTCACAGCATAGAGACGAGTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGATTCGAGCACATCGAACACAGCTTGAAATCCTTGTTTCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCCTCAGTCTGTCGCAGACATCACTGATTGAGGTATTTCTGTACAAGAGATGCAGAAACATAGCTTGCCATAACCTGCTTCCAGCAGATGATTGTTCTTGTGAAACATGCACTAACAACAATGGCTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACTGATTGTGCCATTCGGGAGCAGCTTATCTGCATGGGTCCTTCTGTAAAGAGTGGATCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGCTGGGTTAAAGATGTCTTCCAACACTGTGCACCATCATGGGATGGGGAGGCTTTGATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCAACGGGGCATGAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTAGAAAAATGGAATCTAAAGCAGCATGTAGAGCAATATTGTTGGTTTTCCAAGAGCTCGACCTGGATTCCCCAAAGAGCCTGGAAAATGCAGAAAGTGGCAGGCTGATTGCTCCACAGGAGGCATGCAATAGAATTGCCGAAGTGGTGCAGGAGGCTATACGAAAGATGGAATTTGTAGCTGATGAGAAGAAGAGAATGCACAAGAAGGCTCGCTTAGCTGTTGAGGCTTGTGATCGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGAGAggcaaaaaaagaaatcacaGATTGAAGAACTAGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCCAAACGAGAGGCTGAAAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCGGAGGAAGAATATACCAGCAACTATTTGAAACAGAAGTTAAGTGAGGCTGAGGCCGAGAAGCAATATCTCTATGAGAAAATCAAATTGCAGGAGAGTTCTCGTTTATCACAGAGCAGTGGGGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTTCTATACAATGGCCCTCCCAAGGCAGACAGTCAATCTAACGACTGCCACCCTTTCCGCACAAACCCATGA 1698 0.4393 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEDPRSNSDNLRESPTESASSRETWPTADAIAAKKMENGKADIDCPDQSVIRHVSSADRISLQDIARERVDVICDKMHRLPDQFLDELKNGLRLILEGGNGSQHRDEFFILQKLVQSRSDLTAKTLIRAHRTQLEILVSINTGIQGFLHPSLSLSQTSLIEVFLYKRCRNIACHNLLPADDCSCETCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGSGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDQRGMKLFWKCDDLKEKLKSRKMESKAACRAILLVFQELDLDSPKSLENAESGRLIAPQEACNRIAEVVQEAIRKMEFVADEKKRMHKKARLAVEACDRELADKAREAGELKMERQKKKSQIEELERIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSRLSQSSGDPSSMLMYSKIHDLLYNGPPKADSQSNDCHPFRTNP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04160 565 MobiDBLite consensus disorder prediction 545 565 - -
Tsu05g04160 565 PANTHER PROTEIN OBERON 2 1 556 - -
Tsu05g04160 565 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 556 IPR004082 -
Tsu05g04160 565 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Tsu05g04160 565 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g04160 565 PIRSF UCP025218 1 550 IPR004082 -
Tsu05g04160 565 MobiDBLite consensus disorder prediction 549 565 - -
Tsu05g04160 565 Pfam Coiled-coil region of Oberon 413 544 IPR032535 -
Tsu05g04160 565 MobiDBLite consensus disorder prediction 1 53 - -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Tsu05g04160 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Tsu05g04160 565 Coils Coil 433 488 - -
Tsu05g04160 565 MobiDBLite consensus disorder prediction 38 52 - -
Tsu05g04160 565 CDD PHD_OBE1_like 225 284 - -
Tsu05g04160 565 SMART PHD_3 225 285 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04160 Tsu-Chr5 52241158 52243263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04160 195 297 PHD Gene Family AT5G57380 31.731 1.12e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04160 - - gmx:100795450 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04160 05 52241158 52243263 Tsu05g04160 05 52241158 52243263 ECH