Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04151 ATGTCACAAGCAAGCATGTCCTCAGAATCAGATGGTGGCAACATAGAACTTGGTGCTAGTTTACTACTTGCTACTACTACTAGCAGCAGCAAATACAGAAAGATATGGCATAGAAGCAAGATACTACTATATATAAAAGTCATCATCTCCTTGAGGAAGGATACAACTGCTAGTGAAAATTATGAAGAATCTCTTCTGCCATCACCACTACCAAACACTTCATTAGCTCCTAGTCCTCCTGCTAGAACCAAATCATCGGTTGGAATTGATATACCCTCTCACACTCAAGAGGGGTATATTGCTGAAATTGTGAAGAAGAAGGACTTAATATCTCTTCTTGAGTTTGGTGGGGTTGGTCGCGTTTGTGAAATTCTTCGCGGTCAAACTCATCACCCATTAGAGAATATCACTGGGAACCTTGGAACAAGCTTCTCTAGCATTTTATGGAATAGCTGCAAGCACAATTGTTACACAATTTCAATGATGTTGATTTCGGCCTCATTGTCCTTTGCCACGGAGCTCAAGCAGGAGGGACCCAAATATGGTTGGCATGATGGCGTTGCTATGGTTTTTGTTGTTCTACTTCTGCTTTCATTCTCTTCAATAACTAACGTTTGGCGCGAACGAAAAATGGTGAAGTTGGCAAAGAGAAAAAGCCAGGAAGTGAAGTTCAATGTTAAAAGAGGTGAACATGATCTTGTTCTTCCCAAATACGATATTGTGGTGGGTGATATGGTGTGTTTGCGTCCCCATGATGAGGTTCCTGCTGATGGTTTGCTTGTGAGTGGCGACGTCCTTGTGCTGGCTGAAGGaatggaaaatgaaaaaattgagtgTGTGGAAAACCCATTTCTTATAGCTGGTTCAAAGGTGATTGAGGGTCATGGACAGATGGTTGTGACATCAGTTGGAAACAAACTGAATGTGGCTGAGATGAAAGGCTCAATGAATtgtaattttgaaaagaaaggcCTTTTGCAGAGTCTAATTGAGAAGCCAATTTCTAACCTTGACAAAGCCTCTCTTTTTATCTTTACACTGATTGCATTTGTATCATTCATTCGCCTAATTTGTAAAAAAGATGGAGATGGTGGCGGGTTGCCGGATATTAAAGGGAATAATGTTTCAGTTGGCCTGTTGGCGCAACTCCTTGAGAACATTTTTTTGAGACCACGAGGAAAGATTTCCATTTTAGCAGGACTTTTTAGTGTTGTAATACTGTGTGTACAACATGGAGTGCCACTTATGGTTACTTTATCTCTCCATTACCAGAATGATAAAGTAGTGGGCAATCAAGAAGTTGTTCTTAACGATTTGTCAGCTTGTACAACAATGGGGTTGGTAACTGTCATCTGCATAGATGTATCTGGCGGGATTATATCAAGACCAATGGAGGTTACAATCTGCATGGGGGAGGGGGAGGCAGGTATGAGCAAGGTTGACGTATCAGAAATAGGTTTAGTTGTACTTGACAAGCTTAAACAAGGACTTGGTTTATCAGTTCTTGCACCAGGACTATCTCCTACTCCTGTGTCCAATTCACTTGTTTCTTGGGCAGAAAAAACATGGGAAATGGAAATTTTATCTTTCAGAGAAAATTTCCACATTCTTAAGCATAGCAAACTGGATTCTAACCAAGAGGTCAGTGGAGTTTTGGTGAGAAAAGTTAGGGTCAGTGAACAAGTTATGCACTTGCACTGGAGCGGGGATGCACCCACGATATTGGAAATGTGTTCACAATACTATGATAGTGAAGGAGGATGTCATTCCATAGAAAATCAGAAAATCAAATTTGAGCAGGTGATTCAAGAGATGGAGGATAGTGGCCTTAAGCCAATTGCATTTGCTTGTAGAGAAACACAAGTGCAAGAACTGGAGCAAGATGAACTGACCTTGTTAGCACTGGTAGGTCTCAAATTCAAGTGTCAAGAATCAACAAAATTAGCTTTGCAAAATCTCAAGAATAACGGAATAGAAATCAAATTGCTCTCAGAGGATGACATCATGGTAGTGAAACACATGGCTTGTGAACTGAGAATAGAAGTGCCGATACACGGTCACCTTGAAGGAAAAGAACTACAAGATTTGAATGAAAACGAAAGATTAGTTAAACTGGATCAAGCCATTGCAATGGGAAGTTTCAGTCCTAAAGACAAGCTTCTCATGGTACAGTGTTTGAAAGACAAAGGTGATGTGGTTGCATTCATTGACCAACAAAGGTTGATTACGAATCATACTTCAGAAGTTCTAAAGCTAGCTGATGTAGGGATAGTTCATAACTATCTAAGCAGAACAATTGATAGTAGAGAGAATTCTGGTATATCTATCACATGTTTCAGTTCATTGGAACCAATTGTTAAGACTGGCAGAAGTAAATATCACAATATTCAAAAGTTCGTTCAACTTCAGATGACAGTTGGTATATCAGGGTTACTCATAACCTTGATTACAACAATATTCACAGGAAATTCTCCCCTAACAGCAGTCCAATTGATATGGGTGAACACACTAATGTGTATTCTGGGTGGCCTAATGATGGTGATGGAACAAAGCAGCGAGGAAGAACTTGCCAAACAACCATCTGATAGGAATCAACCCATTATAACCAAGAAAATATGGAAAAACATAGTTTTTCAGGTTTTGTATCAGGCTTCTGCATGCGTGATACTTGAATTTGGGGGACATGTAACTGACGGTGAAAAGCAAGTAAGGAAAATCATGATCTTCAATACATTCTTTCTATGCCAGCTCTTCAATCTGCTCAATATCATGGATTTCTTGAAAGTAGACGTTTTCAAGATTGATGTTCAGAAGTACTATTTCTTAGTGGCTTTAGGTGGTTGTGTTGTTATGCAGGTTTTGGTAGTTGAGTATGCACAAGGCCTATCAAATTGCATGCGGCTGAATGCCGCTGGATGGGCTATCTGTGTCCTGGTTAGTGTTGTTTCATGGGTGCTTGAATGGACCTTGAAGAAgattttttcagtttttttcaGCACCAATTATAGTTCACCCTTGGACTCTCAAGAGTCTACCCCACAACCTTTGTTCTATCGTTATTGGGGACTTCCATTTATGATGCTTCTTTTGTTCCCTATAGGACTAGCAGGTATGACATTTGCAGGTCATCTTTATGTAAGGTATATATACCAGTTTAGAGTTTAG 3165 0.3937 MSQASMSSESDGGNIELGASLLLATTTSSSKYRKIWHRSKILLYIKVIISLRKDTTASENYEESLLPSPLPNTSLAPSPPARTKSSVGIDIPSHTQEGYIAEIVKKKDLISLLEFGGVGRVCEILRGQTHHPLENITGNLGTSFSSILWNSCKHNCYTISMMLISASLSFATELKQEGPKYGWHDGVAMVFVVLLLLSFSSITNVWRERKMVKLAKRKSQEVKFNVKRGEHDLVLPKYDIVVGDMVCLRPHDEVPADGLLVSGDVLVLAEGMENEKIECVENPFLIAGSKVIEGHGQMVVTSVGNKLNVAEMKGSMNCNFEKKGLLQSLIEKPISNLDKASLFIFTLIAFVSFIRLICKKDGDGGGLPDIKGNNVSVGLLAQLLENIFLRPRGKISILAGLFSVVILCVQHGVPLMVTLSLHYQNDKVVGNQEVVLNDLSACTTMGLVTVICIDVSGGIISRPMEVTICMGEGEAGMSKVDVSEIGLVVLDKLKQGLGLSVLAPGLSPTPVSNSLVSWAEKTWEMEILSFRENFHILKHSKLDSNQEVSGVLVRKVRVSEQVMHLHWSGDAPTILEMCSQYYDSEGGCHSIENQKIKFEQVIQEMEDSGLKPIAFACRETQVQELEQDELTLLALVGLKFKCQESTKLALQNLKNNGIEIKLLSEDDIMVVKHMACELRIEVPIHGHLEGKELQDLNENERLVKLDQAIAMGSFSPKDKLLMVQCLKDKGDVVAFIDQQRLITNHTSEVLKLADVGIVHNYLSRTIDSRENSGISITCFSSLEPIVKTGRSKYHNIQKFVQLQMTVGISGLLITLITTIFTGNSPLTAVQLIWVNTLMCILGGLMMVMEQSSEEELAKQPSDRNQPIITKKIWKNIVFQVLYQASACVILEFGGHVTDGEKQVRKIMIFNTFFLCQLFNLLNIMDFLKVDVFKIDVQKYYFLVALGGCVVMQVLVVEYAQGLSNCMRLNAAGWAICVLVSVVSWVLEWTLKKIFSVFFSTNYSSPLDSQESTPQPLFYRYWGLPFMMLLLFPIGLAGMTFAGHLYVRYIYQFRV 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04151 1054 Pfam Cation transporting ATPase, C-terminus 824 992 IPR006068 -
Tsu05g04151 1054 MobiDBLite consensus disorder prediction 62 89 - -
Tsu05g04151 1054 PANTHER CATION TRANSPORTING ATPASE 76 1010 - -
Tsu05g04151 1054 PANTHER CATION-TRANSPORTING ATPASE PLANT 76 1010 - -
Tsu05g04151 1054 SUPERFAMILY HAD-like 630 760 IPR036412 -
Tsu05g04151 1054 Pfam E1-E2 ATPase 222 355 - -
Tsu05g04151 1054 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 998 IPR023298 -
Tsu05g04151 1054 SUPERFAMILY Calcium ATPase, transduction domain A 223 306 IPR008250 -
Tsu05g04151 1054 Gene3D - 260 470 - -
Tsu05g04151 1054 Gene3D - 779 997 - -
Tsu05g04151 1054 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 638 IPR023299 GO:0000166
Tsu05g04151 1054 Gene3D - 506 634 IPR023299 GO:0000166
Tsu05g04151 1054 MobiDBLite consensus disorder prediction 62 81 - -
Tsu05g04151 1054 Gene3D - 635 778 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04151 Tsu-Chr5 52163515 52167103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04151 32 1017 Primary Pumps ATPases AT3G63380 31.761 8.13e-129 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04151 K01537 - gmx:102661547 1000.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04151 05 52163515 52167103 Tsu05g04151 05 52163515 52167103 ECH