Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04143 ATGTTCTACTTTAAACCTATATGCTCTATGAATAATGGTGATATTATTGGAACAAGTCATGATAGTAGATTGGGGAAGTACAACGATAAAGagaaaaatGCTAAGTTGAAAGACTTTGAGAGAGTGAATTTAGCTGGTGTTGCAATTGGTAATGGACTAACAGACCCTGTGACACAAATGGTTACTCATGCTGATAATGCTATTTTTCACGTCGTTGGAGCTGTATTGCATGCTGATTTTTTGAAAAGTGTGAAGTATATGGTAGAGAAGTTATTGAAGGAGGGGATGAGGGTTTTATTGTATCAAGGTCAGCTCGATTTGAGGGTCGGTGTGGTTCAAGTCGAGGCTTGGGTGAAGACTATGAAGTGGGATGGGATTGTTGATTATGTGAATGCTGAGAGGGAGATTTGGAAGGTAAATGGAGAGGTAGCTGGTTATGTACAAAAATGGAAGTCATTTACTAATGTTATGGTTTTAGGGGGTGAACATCTTTTGCCTACTGATCAACCTTTGAATTCTCATTCCATGGGATTATTCAGACTCTGA 546 0.3846 MFYFKPICSMNNGDIIGTSHDSRLGKYNDKEKNAKLKDFERVNLAGVAIGNGLTDPVTQMVTHADNAIFHVVGAVLHADFLKSVKYMVEKLLKEGMRVLLYQGQLDLRVGVVQVEAWVKTMKWDGIVDYVNAEREIWKVNGEVAGYVQKWKSFTNVMVLGGEHLLPTDQPLNSHSMGLFRL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04143 181 Pfam Serine carboxypeptidase 74 176 IPR001563 GO:0004185|GO:0006508
Tsu05g04143 181 PANTHER CARBOXYPEPTIDASE 70 176 - -
Tsu05g04143 181 SUPERFAMILY alpha/beta-Hydrolases 40 176 IPR029058 -
Tsu05g04143 181 PANTHER CARBOXYPEPTIDASE 27 69 - -
Tsu05g04143 181 Gene3D alpha/beta hydrolase 22 177 IPR029058 -
Tsu05g04143 181 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 69 IPR001563 GO:0004185|GO:0006508
Tsu05g04143 181 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 70 176 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04143 Tsu-Chr5 52114017 52115411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04143 79 163 Calmodulin-binding Proteins AT2G22960 27.907 1.37e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04143 K09645 - gmx:100777309 164.081