Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04138 atgtcttcttcttcatcttcttcttctccatcatcttcatcacatCAACAACCATCTTCATCAATAATAACTCCTTCAAATGTTGTTGATATTCCTGGTCCTAGTAACACTAACaacaatgatgatgaatttgaagccCCTTCTTCTTCAAGACAACGTGCTATGAATGAAGTTTGGCTTGAACCTGTTGTTGAAGCATTGGCTACTCAAGTTGCCATTGATTCTTCTCATTATCATGGTCGTCTTTCTGCTGCTTCTGCTCTTGCCATTATTTTTCAGGTTTGTTCTACATGGAGAGAAGTGTCACGCTCGGATCTACTGTGGCAGAGGCTCACAAGACGCATCTGGCGCAGAACCTATAGATTGAGGGACACGTGGCAACTTGAGTACATCTACTGGCATCGAACGGCCAGGAACTTCTCAACAGGTAGACACGCTTTAGTGGTCCCACAATATGATCCGGGAGACCACCACCAAGCCCTCATTTGCCGCTGCCTCACTCTCTCCGACACCCACCTTGCCTGCGGCTTTGTCGATGGTACCGTTCGACTCTTCAATCTCAACACCGGCGCACACATCACTACTTTTTGGTCCAATCACGGTCATTTATTCGGCCCATTCTCACAATCTATTTCCGGAATCGTAATTGCAAATTCTAGTCTCACTTTTGCAAGACTAGACGGTGATATTTACATGTCATTGATCAATGGACCCGTACATATACCCGGGCCCATTCCAGCACGAAGAGCAATTATCGGTGATGTAGTTAATAACGGAGTATTAGTAGAATTCGTGGGTTGTAACCGATTTTGGGTTGGATTGTTCGCGGGCCATGCAGGTGGAGCTTTTCAAATATGGGACGCGCAAACGGAACAACGCGTGTTCGTTGGCGGTTCATTAACCGACCCAGAAGCGGTTCAAGGATGGCATATGTTAACAGAATTAGTTGAACCCGTTGGTCGAATCCGAGTCACCGAACGAGAATTCGTTGTAGCATGCACAACATCAAGATTAGTTTGTTTCAACTTAAGAAATCCAGAGATTCTATTACGTGACATGGGATCAACAACAGGTTTCATGGTAAGTTCGTTAGACGTTAGCCATGAAATTTTTGTTGTGGTGGAAAGAAATGGTGTTGGAACAGTTAGGCGCGTGGGGAATTTTGAGCGCGTGAGTAGGTTTCGGTTAAGAGGTTCATGGTTAAGAGGTTTATTAGGGTGCATGAATTTAGGGTATGTTATAACATATTCAAGTGGGTCTGGTTTGTTAAGAGTGTGGGACATACATGAACCTACGGCAAGGTTGTGTATAACTATTGCGGTTAGAGATGATGGTGGAGAACAAGGACATGTTCATGGTAATAGTATGGTTGCTAATCAAACTCATGTTGCTATTTCTTCTAATGATTCTTCCATACATTTATTGGATTTTAGTGTACAGTAG 1443 0.4186 MSSSSSSSSPSSSSHQQPSSSIITPSNVVDIPGPSNTNNNDDEFEAPSSSRQRAMNEVWLEPVVEALATQVAIDSSHYHGRLSAASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFSTGRHALVVPQYDPGDHHQALICRCLTLSDTHLACGFVDGTVRLFNLNTGAHITTFWSNHGHLFGPFSQSISGIVIANSSLTFARLDGDIYMSLINGPVHIPGPIPARRAIIGDVVNNGVLVEFVGCNRFWVGLFAGHAGGAFQIWDAQTEQRVFVGGSLTDPEAVQGWHMLTELVEPVGRIRVTEREFVVACTTSRLVCFNLRNPEILLRDMGSTTGFMVSSLDVSHEIFVVVERNGVGTVRRVGNFERVSRFRLRGSWLRGLLGCMNLGYVITYSSGSGLLRVWDIHEPTARLCITIAVRDDGGEQGHVHGNSMVANQTHVAISSNDSSIHLLDFSVQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04138 480 MobiDBLite consensus disorder prediction 1 48 - -
Tsu05g04138 480 Gene3D - 262 480 IPR015943 GO:0005515
Tsu05g04138 480 Gene3D - 115 254 IPR015943 GO:0005515
Tsu05g04138 480 PANTHER WD40 REPEAT PROTEIN 12, 37 5 479 - -
Tsu05g04138 480 PANTHER TRANSCRIPTIONAL REGULATOR STERILE APETALA 5 479 - -
Tsu05g04138 480 SUPERFAMILY F-box domain 81 135 IPR036047 GO:0005515
Tsu05g04138 480 SUPERFAMILY WD40 repeat-like 157 478 IPR036322 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Tsu05g04138 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04138 - - gmx:100781108 614.764