Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04137 ATGGCATCCATATCCTCTAGCATCTCTGCCACTTCACAAGATCAAGGTGATTCCTCCAACTCAAAAAAAGTGGTGATCATGAAGGAGATCGGACAAGATCAACCCTCGAACTCCAATTCCAACAAGCCTGTCGATTTCGTGAAGCTATCGAAAGAGGATTCGATTGTCCGATCAAAGGTGCGGGAGAACGATAAAAAGATTAATTTAGATTCACAGTCTTTTTCATGCTCCTTTTGCAAGACACAATTTTCTACTTCACAAGCATTAGGAGGACACCAGAATGCTCATAAGGCGGAACGCACTTTAGAAAAGCATCGAAAACAAAGGGCACTTGGGGCTAGAATGGATTCCTTGATTCAAAAACCATCTTATTTTAAACCTAGGATTGGGTATGGTAATGGTGCTATATGTTTGCAAGAGACATTAAATTCTTCTCTTGTGTCATTAAGAAATATGAGAGGTGGTAATAGCGGGGTTGGAAATCTAGATATTGATACATCAACTTTAAGGATGGAAGATgACTTCGTGATGGCGCGACGCGCCAGATCTGCTGCGCAACGCGAAGGCAGTTACACACATATGTGTGACGCGCGCCAAAAACACATGAATCTGCGCGATGCGCCAGATGAAGATGTGCGATGCGCCACTGTCCGAAGCCAAACATGCCACAAATATGATCCTCTACGTGACGCGCAACCTTTTCCTTTGCGACGCGCAAGCATCCGAGACAAAACCAGGCAAACCTTTTCTTCCCTGCGTGACGTGCCACAACCTTCTACCAAAAGCTGA 789 0.4461 MASISSSISATSQDQGDSSNSKKVVIMKEIGQDQPSNSNSNKPVDFVKLSKEDSIVRSKVRENDKKINLDSQSFSCSFCKTQFSTSQALGGHQNAHKAERTLEKHRKQRALGARMDSLIQKPSYFKPRIGYGNGAICLQETLNSSLVSLRNMRGGNSGVGNLDIDTSTLRMEDDFVMARRARSAAQREGSYTHMCDARQKHMNLRDAPDEDVRCATVRSQTCHKYDPLRDAQPFPLRRASIRDKTRQTFSSLRDVPQPSTKS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04137 262 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
Tsu05g04137 262 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Tsu05g04137 262 PANTHER ZINC FINGER PROTEIN JAGGED 62 108 IPR045320 GO:0003700
Tsu05g04137 262 MobiDBLite consensus disorder prediction 31 45 - -
Tsu05g04137 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Tsu05g04137 262 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g04137 262 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 62 108 - -
Tsu05g04137 262 Gene3D Classic Zinc Finger 49 124 - -
Tsu05g04137 262 MobiDBLite consensus disorder prediction 1 45 - -
Tsu05g04137 262 MobiDBLite consensus disorder prediction 240 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04137 Tsu-Chr5 52056186 52058500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04137 74 108 C2H2 Transcription Factor Family AT5G01860 74.286 2.48e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04137 - - mtr:MTR_3g011970 174.866