Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04111 ATGTTAAGAGAAAGTATCCACACAGACACTACAATCTATCTCATTTCATCTGAGAAAAGTATAAGAGTTCATCGAGCTGTTCTTGCGACTCGGTCACCGGTTTTTAATAGTATGTTTACACATGATTTTAAGGAGAATAATACATGTGTTATAAACATCTCAGACATGTCATTTGAAGTTTGTCAAGCATTTATGAGTTATCTATATGATAACATCAAAGATGAAGAACTTGAGAGTTATAGTTTGGACTTAGTGGCTGCTGCTGAGAAATATGGTGTTAATGACTTGAAAAAGGATTGTGAAAAGTGTCTTCAAGAAGatatcaacataaaaaatatacttgTGAAGTTGCAAATTGCATATTCTTATCGATTGCCAAACTTGAAGATTAGTTGTACTCGATATTTAGTGCAATTTGGTAAAATACATGAAATATGGGATGAGTTTGATGCCTTTATAAAAACTTTAGATAAAGATACAATTTGCGAAATATTTCATGAAATTATTCCTTAA 513 0.3021 MLRESIHTDTTIYLISSEKSIRVHRAVLATRSPVFNSMFTHDFKENNTCVINISDMSFEVCQAFMSYLYDNIKDEELESYSLDLVAAAEKYGVNDLKKDCEKCLQEDINIKNILVKLQIAYSYRLPNLKISCTRYLVQFGKIHEIWDEFDAFIKTLDKDTICEIFHEIIP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04111 170 PANTHER OS08G0495500 PROTEIN 1 169 - -
Tsu05g04111 170 Pfam BTB/POZ domain 6 106 IPR000210 GO:0005515
Tsu05g04111 170 ProSiteProfiles BTB domain profile. 8 71 IPR000210 GO:0005515
Tsu05g04111 170 Gene3D Potassium Channel Kv1.1; Chain A 1 138 IPR011333 -
Tsu05g04111 170 SUPERFAMILY POZ domain 2 106 IPR011333 -
Tsu05g04111 170 PANTHER OS08G0495500 PROTEIN-RELATED 1 169 IPR044714 -
Tsu05g04111 170 SMART BTB_4 10 108 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04111 Tsu-Chr5 51795309 51795821 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu05g04111 BTB 2.5e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04111 K10523 - csv:101218769 195.282