Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04093 ATGTCTACAAACTTAAAGAATCTTTCACTTTTTCACAAAATCTTCTCCCTCACTTTGCTTCTTTTCTCAATAAgctttcttttctttccatGTTGTAACTCTCTTGATGAACAAGGCCAAACTCTTTTAGCATGGAAGGAGAGTTTTAACATTACTTCAGATGCATTAGCATCTTGGAATCTTTCAAACCAAACACCATGCAATTGGTTTGGTGTGAAGTGCAATTTACAAGGAGAGGTAGAAGAGATAAATTTGCAGTCATTGGACTTACAAGGTTCATCACTGCCTTCAAATTTTCAACCTCTCAAGTCCTTGAAGGTTCTTATCATGTCATCAACCAACATCACAGGAAGGATTCCAAAACAAATTGGAGATTATCAAGAGCTTGTTTTCATTGATCTCAGTGAAAATTCTCTCTTTGGTGAAATCCCAGATGAAATTTGCAGGCTAAGCAAACTTCAAAATTTGGCTCTTCATGCAAACTCTCTTGAAGGAAATATTCCACTCAACATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCTTTGACAATAAACTCAGTGGCGAAATTCCAAAGAGTATTGGTTCCTTAAGTAAGCTTCAAGTATTAAGAGCAGGAGGGAATTCAAACCTCAAGGGTGAGCTGCCATCGGAGATCGGAAACTGCACCAACTTGGTCATGTTAGGCCTCGCGGAAACTGGCATTTCCGGTAGTATTACTTCTTCAATAGGGATGCTGAAAAAACTACAGACCATAGCCATTTACACAACTCAGTTGTCAGGCTCTATTCCAGAAGAGATAGGAAATTGCAGTGAGTTGCAGAATCTGTATTTGTATCAGAACTCAATTTCTGGTCCAATTCCACGTCAAATTGGAGAGCTGAACAAACTTCAGAGTCTACTTTTATGGCAAAACAATATGGTAGGAGCAATACCAGAAGAGCTTGGAAACTGCAAAGATCTCAGTGATATAGATTTGTCAGAAAATCGTCTCACAGGTAGCATACCAATCAGTTTTGGAAAGCTATCAAATCTAAAAGGACTTCAGCTGAGTGTTAATCAACTTTCAGGTATTATACCACCTGAAATTTCAAACTGCAGTTTTTTGACTCAGCTTGTAGTTGACAACAATGCTATTTCTGGTGAGATTCCTTCTGTTATTGGCAACTTGAGAAGCTTGAAACTCTTCTATGCATGGAGGAACAAGCTAACAGGAAAAATCCCAAATAGTCTTTCAGAGTGCAAAGATCTTCAGTCACTTGATCTTTCATACAATAACTTAACTGGTTCAATACCAAAAACACTATTTGTGTTGAAAAATCTCACTCAACTTATGCTTCTTTCCAATGATTTGGAAGGATTCATACCAACTGATATTGGTAACTGCACAAGTCTCAATAGGTTGAGGTTAAATCAGAATAGACTAGTTGGTAACATTCCATCTGAGATTGCCAActtgaaaaatttgaattttttggacTTGAACAACAATCATCTTGTAGGGGAGATTCCTTCAACATTATCAAGATGCCAAAATCTTGAGTTTATTGATCTCTCACACAACAAGCTCTCAGGGAATTTAGATGCTCTTTCTAGCCTTCAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGAATTCGCTGGTGAATTGCCTAACACAACATTGTTTAGGAAACTCCCTCTCAGTGATCTCACTGGAAATAAAGGTCTTCAAATTTCTGAAGGTGTTGTAACTCCAGCAATCAGAACAAGAGCCAAAAGTCATGTTAGATTAGATATGGAGATTATATTGTTAATTCTCTTTAGCACCATTCTAGTACTAATACTTCTCACATTCTATGTCCGGGTACGTGATCTTAATGCTGTGGAAGCATTCTGGAGACATTTCGAACAATCCAATATACCTTTGTATCAGGGGATGTTTGAATTCTCTATTGATGAAGTTGTCAAGAATTTCAAAGCATCCAATATCATTGACATTACAAGCTCTGGAATTTTGTACAAGATAACAATTCCGAATGGCCATATACTAGCAGTTAAAGAGATGCGGCCGGATTCTGGAGCCTTAAGTTCAGAAATCCAAATATTAAGTTCAATCAAACATAAGAATATCATCAAGCTTCTTGGTTGGGGACCCTATAAAAATAGCATGCTGCAGTTTTATGAGTATTTACCTAGTCTGAGCTCATTGCTTCATGGTTCAGAAAAGGGAAAGTTAGATTGGGATACCAGGTTTGAAGCCGTCCTAGGCCTAGCTCAAGCACTTGCATATTTGCACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCAACAAGTCTGTTATTAGGTCCTGGCTATCATCCTTACCTTGCTGACTTTGGCCTGGCAAGAATTGCAAGTGAAAAAGGCGATGATGCTAAATCCAATCCAGTTCAAAGACCTCGCTACACCGCGAGTTCCCATGGATACACAGATCCTGATCTTGACTCAACGCAGAAAATCAATGAGAAAACCGACGTGTACAGTTTCGGCGTGATCCTACTTGAGGTGCTGACAGGAAAGCAACCATTAGATCCAACTCTGCCAGGAGGTATACACTTGGTTCAATGGGTTAAGAATCACCTGTCTAGCAAAGGAAACCCATTAGGAATTCTTGACTCAAAGCTGAGAGAGAGGACTGAACTTACTGCTATGCATGAAATACTACAAACTCTAGCTGTGTCAATTTTATGTGTCAGTCCAAAAGCTAATGAACGTCCAACGATGAAAGACGCCATTGCAATGCTCAACCAATTTCGATATTTTGTTTAG 2802 0.3808 MSTNLKNLSLFHKIFSLTLLLFSISFLFFPCCNSLDEQGQTLLAWKESFNITSDALASWNLSNQTPCNWFGVKCNLQGEVEEINLQSLDLQGSSLPSNFQPLKSLKVLIMSSTNITGRIPKQIGDYQELVFIDLSENSLFGEIPDEICRLSKLQNLALHANSLEGNIPLNIGNLSSLVNLTLFDNKLSGEIPKSIGSLSKLQVLRAGGNSNLKGELPSEIGNCTNLVMLGLAETGISGSITSSIGMLKKLQTIAIYTTQLSGSIPEEIGNCSELQNLYLYQNSISGPIPRQIGELNKLQSLLLWQNNMVGAIPEELGNCKDLSDIDLSENRLTGSIPISFGKLSNLKGLQLSVNQLSGIIPPEISNCSFLTQLVVDNNAISGEIPSVIGNLRSLKLFYAWRNKLTGKIPNSLSECKDLQSLDLSYNNLTGSIPKTLFVLKNLTQLMLLSNDLEGFIPTDIGNCTSLNRLRLNQNRLVGNIPSEIANLKNLNFLDLNNNHLVGEIPSTLSRCQNLEFIDLSHNKLSGNLDALSSLQNLVSLNVSFNEFAGELPNTTLFRKLPLSDLTGNKGLQISEGVVTPAIRTRAKSHVRLDMEIILLILFSTILVLILLTFYVRVRDLNAVEAFWRHFEQSNIPLYQGMFEFSIDEVVKNFKASNIIDITSSGILYKITIPNGHILAVKEMRPDSGALSSEIQILSSIKHKNIIKLLGWGPYKNSMLQFYEYLPSLSSLLHGSEKGKLDWDTRFEAVLGLAQALAYLHHDCVPSILHGDVKATSLLLGPGYHPYLADFGLARIASEKGDDAKSNPVQRPRYTASSHGYTDPDLDSTQKINEKTDVYSFGVILLEVLTGKQPLDPTLPGGIHLVQWVKNHLSSKGNPLGILDSKLRERTELTAMHEILQTLAVSILCVSPKANERPTMKDAIAMLNQFRYFV 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04093 933 Gene3D Ribonuclease Inhibitor 297 576 IPR032675 -
Tsu05g04093 933 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Tsu05g04093 933 SUPERFAMILY L domain-like 66 320 - -
Tsu05g04093 933 Pfam Protein kinase domain 668 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04093 933 Gene3D Transferase(Phosphotransferase) domain 1 726 931 - -
Tsu05g04093 933 SUPERFAMILY Protein kinase-like (PK-like) 645 928 IPR011009 -
Tsu05g04093 933 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 519 - -
Tsu05g04093 933 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Tsu05g04093 933 Pfam Leucine rich repeat 322 380 IPR001611 GO:0005515
Tsu05g04093 933 ProSiteProfiles Leucine-rich repeat profile. 513 535 IPR001611 GO:0005515
Tsu05g04093 933 SUPERFAMILY L domain-like 261 595 - -
Tsu05g04093 933 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Tsu05g04093 933 PRINTS Leucine-rich repeat signature 487 500 - -
Tsu05g04093 933 PRINTS Leucine-rich repeat signature 418 431 - -
Tsu05g04093 933 MobiDBLite consensus disorder prediction 809 826 - -
Tsu05g04093 933 Gene3D Ribonuclease Inhibitor 192 291 IPR032675 -
Tsu05g04093 933 MobiDBLite consensus disorder prediction 801 828 - -
Tsu05g04093 933 SMART LRR_typ_2 174 198 IPR003591 -
Tsu05g04093 933 SMART LRR_typ_2 415 439 IPR003591 -
Tsu05g04093 933 SMART LRR_typ_2 487 511 IPR003591 -
Tsu05g04093 933 SMART LRR_typ_2 343 367 IPR003591 -
Tsu05g04093 933 SMART LRR_typ_2 295 319 IPR003591 -
Tsu05g04093 933 SMART LRR_typ_2 534 559 IPR003591 -
Tsu05g04093 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 517 932 - -
Tsu05g04093 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 519 - -
Tsu05g04093 933 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 517 932 - -
Tsu05g04093 933 ProSiteProfiles Protein kinase domain profile. 653 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04093 Tsu-Chr5 51683258 51686654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04093 95 932 Receptor kinase-like Gene Family AT5G56040 47.411 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g04093 Pkinase 1.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04093 - - cam:101492613 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04093 05 51683258 51686654 Tsu05g04093 05 51683258 51686654 ECH