Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04070 ATGGAAAATTTCAGAGAGAATGAGATTGAGGACAATATGTCAATGTCACCTCCGTCCGTTGGTTCCATGCAGATTGCAGGAACCAATGGCTTTGGCCACAGCATGGAGTTAATGTCTCAGGCCTACCTTCTTAATAGGTACTCAGAGATCGATATACAAGTTCAGGATTCAAGTTTCAACCAAGATCCCCCTCTTCCTGTATATCTCAAGTTTGAAGATGTAGAGTTCAAAGTGAGAAATAGCCAAACAGTTCCCAAAAACCCTGTGAAGACAATGATGTCAAAGGTATCCACACAAAACAATGTGGTCGAAAGAAACAAATACAAGAAAATTTTAAAGGGTATCACAGGAAGCATTGGCCCGGGCGAAATTCTAGCTTTGATGGGTCCATCTGGTAGTGGAAAGACAACATTGCTGAGTGTTATAGGAGGAAGATTAAATGACAATGTAAGAGGAAAGATAACTTACAATGATGTTCCATATAGTCCTGCTCTCAAGAGGAGGATTGGATTTGTTCCACAAGAGGATGTGCTTTTCCCACAACTTACGGTTGAAGAAACATTAATCTTCTCTGCATTATTAAGGCTACCAACCAACATGAGCAAGCAACAAAAATACGCAAGACTTGAGAACACTATCAAGGATCTAGGCCTAGAAAGATGCCGCCATACGAAAATAGCTGGAGGCATATCCGGGGCAGAAAGGAAGAGAACAAGCATTGGCTATGAAATTCTTGTTGACCCTTCACTGCTTCTACTTGATGAGCCAACTTCAGGCCTTGATTCCACCTCAGCAAACAAACTCCTTCTCACTCTTCAAGGACTAGCGAAAGCATCAGATTAG 843 0.4176 MENFRENEIEDNMSMSPPSVGSMQIAGTNGFGHSMELMSQAYLLNRYSEIDIQVQDSSFNQDPPLPVYLKFEDVEFKVRNSQTVPKNPVKTMMSKVSTQNNVVERNKYKKILKGITGSIGPGEILALMGPSGSGKTTLLSVIGGRLNDNVRGKITYNDVPYSPALKRRIGFVPQEDVLFPQLTVEETLIFSALLRLPTNMSKQQKYARLENTIKDLGLERCRHTKIAGGISGAERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKASD 280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04070 280 Gene3D - 94 279 IPR027417 -
Tsu05g04070 280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 277 IPR027417 -
Tsu05g04070 280 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 5 278 - -
Tsu05g04070 280 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 278 - -
Tsu05g04070 280 Coils Coil 199 219 - -
Tsu05g04070 280 SMART AAA_5 121 280 IPR003593 -
Tsu05g04070 280 Pfam ABC transporter 112 258 IPR003439 GO:0005524
Tsu05g04070 280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 278 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu05g04070 Tsu-Chr5 51449505 51487530 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04070 110 264 Calmodulin-binding Proteins AT2G36910 29.775 3.87e-11 61.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04070 K05681 - gmx:100815259 456.447