Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04040 atgaaTCCCTTCAAATCAACCCTTTTCACTCTCTTCACCACCTTCATTCTCACCGCCGGTAACAACATCCAACTAGACTTCCCTTATTTCACCACCACCAACACCGCCACAAACATCACCTTCATCGGTGATTCATCTCTCAGAAACCGCGTCGTTTCTTTAACTAAATCCACCACTTTCAGCACTGGTTCTATCATCTATAACAAACCCATTTCTCTCTTTGACATTTCAACAAACACTACGTCTTCATTCTCAACAACGTTCTCTTTTTCCATTACAAACCCTAATAACCCCACTTCATTTGGTGATGGCATTGCTTTCTTCATCTCCCCCAACAATCtctcatcatcaccatcatcatcatcatcaacaacaaccacatTTGGTCTTCCTACAAATTTTGTTGCTGTTGAATTCGATACTCGATTCGACCCTCGATTCAATGACCCGAATGAGAATCATATAGGTTTCAATATTGATACATTGGATTCTATGAAAACTGTTGATCCTATTTACAATGGGATTGATCTGAAGAGTGGGAATACTATTACTTCTTGGATTGATTACAAGACTGATGTGAATTCTCTTTCGGTTTTCTTGAGCTATTCTCCGATTAAGCCGCGTGATCCGATTCTTTTTGTAAACGTTGATCTTTCGGAGTATTTTAGAGGTAACAATGGTGTTTACGTTGGTTTTTCTGCTTCAGCTGAAAAAAGTACTGAACTTCATCAAATTGAAAGTTGGAGTTTTTACACTGTTGGGTTTGAACCTGCAAGACCTAGGTTGAGGAGTCATAATGTTTCGGATAATTCTGTTAGTGTAAATACCGGGAATGAGGTACACGTTAATGGGTCGCAGTCGCATTCACATTCGCGTTCATCTTCTTTTTCTAAGAAGAAAAGGTTTGGTCTTGGTTTTGCTGTTGCAGGTCCTATTTTTTTCTGTGTTGTTTTTTCATTGTTGGGGTATTATTCTTTTATGAAATGGAAGGGGGTGAGAAAATGTACGTTGAAGAATTTTGAAACTGGGTTTGTTGCTTGTCCTAGAGAGTTTAATTACAGAGAATTGAAATCTGCGACACGAGAGTTTCATCCTAGTAGGATCGTTGGTCATGGTTCGTTTGGTACTGTGTATAAAGCTTTCTTTATATCTTCTGGAACAATTGCTGCAGTGAAAAGATCGAGGCATTCTCATGAAGGAAAAACCGAGTTTCATTCTGAATTGTCCATTATTGCTGGCTTAAGACACAAGAATTTGGTTCAGTTGTTAGGTTGGTGTGTTGAGAAAGGAGAGTTGCTTCTTGTTTATGATTTCATGCCTAATGGAAGCTTAGACAAGATGCTTTACAAGGAACCTGAGAGAGGGAAATTGTTGACTTGGTCTCATAGGGTTAACATCGTTGTTGGTTTGGCTTCTGTTTTGGTTTATCTTCACCAAGAATGTGAGCAAAGAGTGATTCATAGAGATATCAAAACTGCGAATGTTTTGCTAGATGGGAATTTCAATCCTAGGTTGGGTGATTTTGGATTGGCTAAACTCATGGATCATGATAAGAGTCCTGTTTCAACTTTAACTGCTGGAACAATGGGATACCTTGCACCTGAATATCTTCAATACGGGAAAGCTACTGATAAAACCGATGTTTTCAGCTATGGTGTTGTTGTGCTTGAAGTGGCTTGTGGGAAGAGACCTATTGAAAGAGAAGGTCCGAAGATGGTTAATTTGGTGGATTGGGTTTGGGGGTTGTATTCTGAAGGGAAGATAATTGAAGCTGTTGATAAGAGGTTGAATGGTGAATTTGAGGAAGAGGAAATGAAGAAGGTTTTGATGTTAGGGTTGAGTTGTGCTAATCCTGATAGTGCTGAGAGACCTACTATGAGAAGAGTATTGCAGATTCTTAACAATGAAGCTGTTCCATTTACTGTTCCAAAAGTCAAGCCATGCCTTACATTTTCATCTGATTTGCCATTGACTATTGATGAGATTGTTtctgatgttgatgatggtgagGGTGAAGAGTTCAATACTAGCCAGTCTATGTGTGAGATTAAAATTGAATGA 2061 0.377 MNPFKSTLFTLFTTFILTAGNNIQLDFPYFTTTNTATNITFIGDSSLRNRVVSLTKSTTFSTGSIIYNKPISLFDISTNTTSSFSTTFSFSITNPNNPTSFGDGIAFFISPNNLSSSPSSSSSTTTTFGLPTNFVAVEFDTRFDPRFNDPNENHIGFNIDTLDSMKTVDPIYNGIDLKSGNTITSWIDYKTDVNSLSVFLSYSPIKPRDPILFVNVDLSEYFRGNNGVYVGFSASAEKSTELHQIESWSFYTVGFEPARPRLRSHNVSDNSVSVNTGNEVHVNGSQSHSHSRSSSFSKKKRFGLGFAVAGPIFFCVVFSLLGYYSFMKWKGVRKCTLKNFETGFVACPREFNYRELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFHSELSIIAGLRHKNLVQLLGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLTWSHRVNIVVGLASVLVYLHQECEQRVIHRDIKTANVLLDGNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSYGVVVLEVACGKRPIEREGPKMVNLVDWVWGLYSEGKIIEAVDKRLNGEFEEEEMKKVLMLGLSCANPDSAERPTMRRVLQILNNEAVPFTVPKVKPCLTFSSDLPLTIDEIVSDVDDGEGEEFNTSQSMCEIKIE 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04040 686 SUPERFAMILY Protein kinase-like (PK-like) 347 655 IPR011009 -
Tsu05g04040 686 ProSitePatterns Legume lectins beta-chain signature. 135 141 IPR019825 -
Tsu05g04040 686 Pfam Legume lectin domain 24 257 IPR001220 GO:0030246
Tsu05g04040 686 Pfam Protein kinase domain 364 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04040 686 CDD STKc_IRAK 369 635 - -
Tsu05g04040 686 Gene3D Transferase(Phosphotransferase) domain 1 439 642 - -
Tsu05g04040 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Tsu05g04040 686 SMART serkin_6 363 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04040 686 Gene3D - 23 253 - -
Tsu05g04040 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 252 IPR013320 -
Tsu05g04040 686 ProSitePatterns Protein kinases ATP-binding region signature. 369 392 IPR017441 GO:0005524
Tsu05g04040 686 ProSiteProfiles Protein kinase domain profile. 363 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g04040 686 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 32 653 - -
Tsu05g04040 686 Gene3D Phosphorylase Kinase; domain 1 328 438 - -
Tsu05g04040 686 PANTHER - 32 653 - -
Tsu05g04040 686 CDD lectin_legume_LecRK_Arcelin_ConA 41 254 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04040 Tsu-Chr5 51205034 51207094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04040 16 670 Receptor kinase-like Gene Family AT5G55830 56.696 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu05g04040 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04040 - - adu:107496163 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04040 05 51205034 51207094 Tsu05g04040 05 51205034 51207094 ECH
Tsu03g01042 03 9669479 9671431 Tsu05g04040 05 51205034 51207094 PCT