Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04038 ATGGCTTCTGGAGGTCCAGATCAGTCTGGAGGGTCAAGCTCAGCTGAATTCATTAGCTTTATTACCAGTGAGGCCAACTATAAATGCCAATTGGATCAAAGAAACTCAATTACTGCTGAAGATTTGATAGATGCTATGCGAAAAGTTGGTCTCGATGTCATCGCTGATTATTCCTTCCACTACAACCAACACTATCGTAATTACCAAGCTGGTGTTAGTGGCCAATATTATGCTCCTCCACCACTAATGCTGCCACAAGATGTTCAAGCTCGTGTTAGCGGCCAATATTATGCAACTCCTCCACCACCATTGCCATTACGGGATGTTCAAGCTCGCAATTTTCCAATGACTCCAAATATCATGTTTTCGAATCCAATAGATGTGGGTACATTTATTGGAGTTGATGATGAAGTACTTCCACCACCACCGCTGGCACAAGATGTTCAAGCTCGTGTTAGTGGCCAATATTATgctcctcctcctccaccacTACTGCCATCACAGGATGTTCAAGCTCGCAATTTTTCAATGGCTCCAAATTTCAAGTTTCTGAACCCAATAGAAATGGGTACATTTTCTGGAGGTGATGATGGTGAAGAACTTCCTCCACCACTACTACCACAAGATGTTCAAGCTTATGTCAGTGGCCAATTCACacctcctccaccaccaccaccggaTGATCAAGCTCGCTATTTTCCAACGACTCCAAATTTCATGTTTCCAAATCCAATAGAAATGGGTTCATATTTTGGAGATGATGATGCTGAAGGACTTCCTCCACCACCACTACCACAAGATGTTCAAGCTTGTGTCAATGGCCAATATGCATCTCCTCCACCACCACTGGATGTTCAAGCTCGCTATTTTCCAATGGCTCCAAATTTCAAGTTACCGAACCCAATAGAAATAGGAGCATTTTTCGGAGATGATGATGGTGAAGAACTTCCTCCACCACCACTACCACAAGATGTTCAAGCTCATGTCAGTGACCAATATGCACCTCCtataccaccaccaccacaggATGTTCAAGCTTGTGATTTTCCAATGGCTCCAAATTTCATGTTTCCGGACCCAAAAGAAATGGGTTCACTTTTTGGAGATGGTTATGGTGAAGAACTTGGTGGCGGCGGCGGTGGTGATGGTAATTCAAACGATGAAGAGTTTGATCTTATTGCTTTTCTTAAAAGTTATGACTGA 1203 0.4032 MASGGPDQSGGSSSAEFISFITSEANYKCQLDQRNSITAEDLIDAMRKVGLDVIADYSFHYNQHYRNYQAGVSGQYYAPPPLMLPQDVQARVSGQYYATPPPPLPLRDVQARNFPMTPNIMFSNPIDVGTFIGVDDEVLPPPPLAQDVQARVSGQYYAPPPPPLLPSQDVQARNFSMAPNFKFLNPIEMGTFSGGDDGEELPPPLLPQDVQAYVSGQFTPPPPPPPDDQARYFPTTPNFMFPNPIEMGSYFGDDDAEGLPPPPLPQDVQACVNGQYASPPPPLDVQARYFPMAPNFKLPNPIEIGAFFGDDDGEELPPPPLPQDVQAHVSDQYAPPIPPPPQDVQACDFPMAPNFMFPDPKEMGSLFGDGYGEELGGGGGGDGNSNDEEFDLIAFLKSYD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04038 400 SUPERFAMILY Histone-fold 14 81 IPR009072 GO:0046982
Tsu05g04038 400 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 15 82 - -
Tsu05g04038 400 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 82 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu05g04038 400 MobiDBLite consensus disorder prediction 366 388 - -
Tsu05g04038 400 Gene3D Histone, subunit A 11 76 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04038 15 83 CCAAT-HAP3 Transcription Factor Family AT1G21970 39.130 1.37e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04038 - K08065 mtr:MTR_5g095920 78.9517