Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04025 ATGGCCAACAATGATAAAAATGAGCCCTTGCTATCGGGACCACAGGACACTGCAGCTCAAAAGGCTAAAGGACGGTTAAATCAAAGAAGGTTCCTCCGTTCTCGAAGTGCTCCTCATACAGATTGTGCTCCTCTGGTGACAAGAAACAACGAATCAATTCCCCTTTATGAGTCCATATTTGGGAATCTACATCCTAGCTTTAAAAATGTGTCTATAATCCTTATAGTCTATCTAGGTGTAGGAACTTTAATCTTCTACCTTGTCAGGAACCAAATCAAGGGAATGAAAACAGATAGATTCCTTGATGCTTTATACTTCACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTTCCGAATAGTGACCTTACAAAACTACTCGCGTGTGCTTTTGTTTTCTCCGGAATGGCGTTGATGGGATTAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGCTAATTAAAGCCATGCACATGCACCAAAAAGTTGGTCCAAGCGAAATTTTAAAGGAGCTTGAGATCAATAAAACAAGATACAAATTTATTCTAGTCCTTTTCCTTCTTTTGATTCTCGTTATTATGGGGACAACCTTTTTGGTTACTGTTGAGAAATTGGATGTTATCGATGCCTTTTATTGTGTTTGTTCAACAATTACGACTCTCGGTTATGGTGATAAAAGTTTCTCTACTCAAGCTGGAAGAATATTTGCAGTGTTTTGGATATTAACCGGTACGATTTGTTTAGCTCAGTTTTTCCTCTACATGGCTGAACTAAACACTGAAAGCAGACAAAAGGCACTTGTCAAGTGGGTTCTTACAAGGAAAATGACCAATGTTGATTTGGAAGCTGCAGATCTCGACGAGGATGGCACTGTTGGGGCTGCTGAATTCGTTATTTATAAGCTGAAAGAGATGGGGAAGATTACTCAAGAAGATATAACACTTGTGATGAAGGAGTTTGAAGAGCTTGATATTGATCAATCTGGTACACTGTCTAATTCTGATATAACACTTGCTCAATCATCTTAG 1050 0.3886 MANNDKNEPLLSGPQDTAAQKAKGRLNQRRFLRSRSAPHTDCAPLVTRNNESIPLYESIFGNLHPSFKNVSIILIVYLGVGTLIFYLVRNQIKGMKTDRFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAMHMHQKVGPSEILKELEINKTRYKFILVLFLLLILVIMGTTFLVTVEKLDVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTICLAQFFLYMAELNTESRQKALVKWVLTRKMTNVDLEAADLDEDGTVGAAEFVIYKLKEMGKITQEDITLVMKEFEELDIDQSGTLSNSDITLAQSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04025 349 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 19 342 - -
Tsu05g04025 349 SUPERFAMILY Voltage-gated potassium channels 180 283 - -
Tsu05g04025 349 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g04025 349 Pfam Ion channel 72 153 IPR013099 -
Tsu05g04025 349 Pfam Ion channel 194 265 IPR013099 -
Tsu05g04025 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu05g04025 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Tsu05g04025 349 Gene3D - 64 158 - -
Tsu05g04025 349 SUPERFAMILY EF-hand 280 344 IPR011992 -
Tsu05g04025 349 Gene3D - 171 276 - -
Tsu05g04025 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Tsu05g04025 349 SUPERFAMILY Voltage-gated potassium channels 70 166 - -
Tsu05g04025 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 19 342 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04025 Tsu-Chr5 51115419 51118546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04025 59 349 Ion Channels AT5G55630 67.698 2.14e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04025 K05389 - gmx:100777388 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04025 05 51115419 51118546 Tsu05g04025 05 51115419 51118546 ECH