Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g04017 atgatgatgatgatgatgtcttgtagagttgttgttgttttgtttgttttggtttttgttaTGATGGTTGAGGTGGATTTAGCAGAATGTGGTAATGGGGGTGTTAAGAGTTATATTAGTTGGGAAGATTTGATGGTTGATGAACAAAGATTTGTTCTTAAGAAGAATATTAATCATAATAATGAGAGAGTTATTGTTGTTGATCAGAATGGATATGGACATTCTAAAACTGTTCAAGGTGCAGTTGATTTAGTTCCTGATTGGAATCAACATAGAGTCAAAATCTACATTTTTCCGGGAATTTACAGAGAAAGAGTGTTTGTGCCAATCACAAAACCTTATATATCATTTATAGGTAGAAGAAATGAAACAGCAAGTCCTGTAATTACATGGAACAGTAAATCATCAGATAAAGGTCCAAATGGTCAAACATTAGGAACCTATGGTTCAGCAACTGTAGCAGTTGATTCAAATTTTTTCTGTGCTACTGAGGTCACTTTTGAGAACACAGTGGTTGCATCAGCAGGTGGACAAGGAATGCAAGCAGTGGCACTAAGAGTAAACAGTGATAAAGCAATGTTTTATAGAGTTAAGATTAAAGGAACACAAGACACTCTCTTGGACAACACAGGAACTCACTACTTCTACAGATGTATCATTCAAGGAAAAGTTGATTTCATCTTTGGCAGTGCAAAATCACTCTATGAGAAGTGTAGGCTTCAATCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCATAGAGATTCACCACTTCAAGATACAGGATTTTCATTTGTAGGATGCAGTATTAGAGGAACAGGAAATGTTTACCTTGGAAGAGCATGGGGTGACTACTCAAGAATAATTTACTCAAATTGTAATATGGATAATATTATTAAACCTGAAGGCTGGTCAGAATGGAATCATCCAGATAGAAGAAAGACTGCAGTGTTTGGTGAATATAACTGCCATGGAAAAGGAGCAGATAGAATACAAAGGGTTCCTTGGTCAAAATCATTAAGCTATGGAGAAGCAAAGCCTTACTTGGACATTAACTTTATAAATGGAAATCAGTGGCTCATACTATAG 1092 0.3425 MMMMMMSCRVVVVLFVLVFVMMVEVDLAECGNGGVKSYISWEDLMVDEQRFVLKKNINHNNERVIVVDQNGYGHSKTVQGAVDLVPDWNQHRVKIYIFPGIYRERVFVPITKPYISFIGRRNETASPVITWNSKSSDKGPNGQTLGTYGSATVAVDSNFFCATEVTFENTVVASAGGQGMQAVALRVNSDKAMFYRVKIKGTQDTLLDNTGTHYFYRCIIQGKVDFIFGSAKSLYEKCRLQSIAENYGAIAAHHRDSPLQDTGFSFVGCSIRGTGNVYLGRAWGDYSRIIYSNCNMDNIIKPEGWSEWNHPDRRKTAVFGEYNCHGKGADRIQRVPWSKSLSYGEAKPYLDINFINGNQWLIL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g04017 363 SUPERFAMILY Pectin lyase-like 63 361 IPR011050 -
Tsu05g04017 363 PANTHER PECTINESTERASE QRT1 15 361 - -
Tsu05g04017 363 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 361 - -
Tsu05g04017 363 Gene3D - 63 362 IPR012334 -
Tsu05g04017 363 Pfam Pectinesterase 65 358 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g04017 Tsu-Chr5 51055588 51058014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g04017 10 315 Carbohydrate Esterase AT5G55590 56.656 1.51e-129 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g04017 K01051 - gmx:100813382 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g04017 05 51055588 51058014 Tsu05g04017 05 51055588 51058014 ECH