Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03999 ATGGCCACCGGAAAAGGAGACGACGCTCCCACCATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTCTGGCAACATGACGCTGTCCAAATCATCCCCAACGACCAGGGCAACCGTACCACCCCCTCTTACGTAGCTTTCACTGATTCCGACCGCTTCATCGGCGACGCCGCAAAGGATCAAGTCACCTGGAACCCCCTCAACACCGTCTTCGATGCCAAGCGTTTGATTGGAAGGAGATTCTCTGATGCTTCCGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTTATTGCTGCTACTGCCGACAAACCGATGATTGTTGTTAACTATAAGAATGAGGAGAAGCACTTTACTGCTGAGGAGATTTCCTCCATGGTCCTCATCAAGATGCGTCAGACTGCCGAGGCTTACCTTAGTTGCACTGTCAAAAAAGCTGTTGTCACTGTCCCAGCTTACTTCAATGACTCTCAGCGCCAAGCCACTAAGGATGCTGGAGTCATTGCGGGACTTAATGTTATTCGTATTATCAATGAACCCACCGCTGCTTCACTTGCCTATGGCCTTGACATGGGATTGGGAGGCAccgttgatgatgatgataatgagaaGGACGTGCTGATTTTTGACCTCGGTGGTGGTACTTTTGATGTCTCTCTTCTAACCATTGACGGCAGTGTCTTTGATGTTAAGGCCACTGCTGGAGACACCCATCTTGGAGGTGAGGACTTTGATAATAGGATGGTtaaccattttgttgaggagttcaAGAGAAAGCACAAGAAGGACATTAGTGGGAACCCGAGGGCTTTAAGAAGGTTGAGGAACGCATGTGAAAAGGCAAAGAGGACTCTCTCATCCACCACACAGACCACCATTGCAATTGACTCATTGTATGAAGGTGTTGACTTGTACACCACAATCACTCGTGACAAGTTTGAAGAGCTCAACATGGACCTCTTTAGGAAGTGCATGAAGACTGTTGAGAAGTGTTTGACTGATGGTGAGATGGATAAGGGGAGTGTACATGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCCAAGGTGCAGTCACTGTTGCAGGATTTCTTCAATGGAAAGAAGCTTTGCAAGAGCATCAACCCGGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCTAAATTGAGTTTTGAGGACAATAAGGAGATTAAGGATCTTGTGTTGCTGGATGTCACTCCCCTTTCACTTGGTGTGGAAACTGCTGGTGGTGTCATGACTGTCCTGATTCCAAGGAACTGTACCATTCCGGCCAGGAAGGAGCAGATTTTCTCAACCTTCTCAGATAACCAGCCTGGTGTGTCCATCAAGGTGTACGAGGGTGAGAAAAGTAGGAGCACAGACAATAACTTGTTGGGTAAATTCGAGCTTTGTGGCATTCCTCTTGCTCCTAGGGGTGTTCCTAAGATCAATGTTTGCTTTGAAATTGACAGCGACGGTATCATGAATGTCTCTGCTGAGGACAAGACTACAGGGAAGAAGAACAAGATCACTATCACCAATGACAAGGGCAGGCTCTCGAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGAAGAAGTCTGAAGATGAGGAATACAAGAAGGTCGATGCCAAGTATGCCTTGGAGAATGTGATGCAGGAGGCCGATAAGTACGATTCTACAAAAGATTCTCCATACCTACGCTTGGAGGGGCAAGTGGAACATGATATTTGCCATCAGGTTACATTACCAACCCCAGGTTTACACCCCTTCCCTTCCGGAAACTTTGGGTATTATTTCAACTCTACAAAAAAGGCTTCACAGAAAATTATAGAGGCACTAAAAGATGATAAATGCTATGCAATTAGATTGCATGGAAAGAAGGGCTCGGGTAAAACATCATTAGTGAAAGCTGAGACGCATGAGTATGAAAAGATTTTTCATAGAGTTATATTTCCCACAGTTTCCAATAACCAAGATGCCAAGAGCATTCAAGAGGGAATTGCTAGCTCACTGAATGTGCATTTTGAAAGAGATGAAAGTGATGGCATGAGAGCAACGAAAATAATCACGGCATTAGAAAGGAAGGATAGGACTATTCTAGTCATTTTGGATAATTTTCCGACAAAGTCTCAACCGCAGGAATTAGGTATTCCTTTTAATAGCAGACAGTGCAAGGTTCTTTTAACCACACGTGACGAGGCAGACTGTGTCTTGATGAGATGTGACCATTCTATTTCTCTGGATCCCTTATCTAATGAGGAAGCTTTGACACTGCTACAAAAACTTTCTGGTGTTAACTCCCAATCTGCTCTATTTGAAGTGGCACAGGAAGTTGCTTCTAAATGCAACGGCTTACCTGGATTGATTGAAAAGGTGGCGACTTCCTTGAAAAATAAATCCTTGGAAAATTGGAAACAATCATTAGTTAGTCTAAGCCACTCAACTGCCCGCTACCAGATTTTTATCAGTTTTAGAGGACCCGATACTCGACATGATTTTACAAACCACCTCCATTATGCTTTGTGCCAGAAGGGGTTCGTGACCTTCAAAGATGATGAATCATTGGAGGGTGGGGTCCCAATTGAGAAACTTCTTGACGACATTGAAGAATCAAGATTTGCAATTGttattttatccaaaaattaTGCAGACTCTGAATGGTGTCTCAAAGAATTGGTCAAAATTCTTGAGTGTAAGGATAAGGAAAGTAAGAACCAACTAGTTTTGCCAATCTTCTATGATGTGCCGCCCACAGATGTGAGGAATGTACGAAATAATTATGCTGATGCCATGGCCAAACATGTAAACAATGGAAAAGATTCATATACAGTTCGAACATGGAAGAATGCATTATATGATATTTGTAAGCTGACGGGATATGAAAAGCTTCATGACCGGAGAGATCAATTTATTGATAAGATCGTCAATTTTGCCTGCGATCATAGACATCGCTTGCATATACAAAGCATTCGTGTTAAGTTGGACTTTCCTGCGACTTGTTATTGGAATTGCTTTATTTCTTTGGGAGAAACTAGACCATTCAAGCCTTATACTTCTGGTTATCATGTACCCTACAAAGCTTCGGATAGTACATTTCCATTATGGTACTCAATCAAGAGAGCTTCAGCATACATCATTGTTATGTCTTCTCACTCAGCATATGGAATTGACATATACTTTGACAATGTTGGCGGAGACATGCTCGAAGCAGCACTTATTAACATGAGAAGGCGCGGTCAAATTGTGGTAGCCGGAATGATATCACAGGAAGGGAAGATAACATATGTTGAAGATATAGCTAAAGGTATTGAGAGTGGACCAGATGCATTAGTAGCAATATTCACAGGCAAGAGTTGTGGCAAACAATGA 3384 0.4306 MATGKGDDAPTIGIDLGTTYSCVGVWQHDAVQIIPNDQGNRTTPSYVAFTDSDRFIGDAAKDQVTWNPLNTVFDAKRLIGRRFSDASVQSDMKLWPFKVIAATADKPMIVVNYKNEEKHFTAEEISSMVLIKMRQTAEAYLSCTVKKAVVTVPAYFNDSQRQATKDAGVIAGLNVIRIINEPTAASLAYGLDMGLGGTVDDDDNEKDVLIFDLGGGTFDVSLLTIDGSVFDVKATAGDTHLGGEDFDNRMVNHFVEEFKRKHKKDISGNPRALRRLRNACEKAKRTLSSTTQTTIAIDSLYEGVDLYTTITRDKFEELNMDLFRKCMKTVEKCLTDGEMDKGSVHDVVLVGGSTRIPKVQSLLQDFFNGKKLCKSINPDEAVAYGAAVQAAKLSFEDNKEIKDLVLLDVTPLSLGVETAGGVMTVLIPRNCTIPARKEQIFSTFSDNQPGVSIKVYEGEKSRSTDNNLLGKFELCGIPLAPRGVPKINVCFEIDSDGIMNVSAEDKTTGKKNKITITNDKGRLSKEEIEKMVQEAKKSEDEEYKKVDAKYALENVMQEADKYDSTKDSPYLRLEGQVEHDICHQVTLPTPGLHPFPSGNFGYYFNSTKKASQKIIEALKDDKCYAIRLHGKKGSGKTSLVKAETHEYEKIFHRVIFPTVSNNQDAKSIQEGIASSLNVHFERDESDGMRATKIITALERKDRTILVILDNFPTKSQPQELGIPFNSRQCKVLLTTRDEADCVLMRCDHSISLDPLSNEEALTLLQKLSGVNSQSALFEVAQEVASKCNGLPGLIEKVATSLKNKSLENWKQSLVSLSHSTARYQIFISFRGPDTRHDFTNHLHYALCQKGFVTFKDDESLEGGVPIEKLLDDIEESRFAIVILSKNYADSEWCLKELVKILECKDKESKNQLVLPIFYDVPPTDVRNVRNNYADAMAKHVNNGKDSYTVRTWKNALYDICKLTGYEKLHDRRDQFIDKIVNFACDHRHRLHIQSIRVKLDFPATCYWNCFISLGETRPFKPYTSGYHVPYKASDSTFPLWYSIKRASAYIIVMSSHSAYGIDIYFDNVGGDMLEAALINMRRRGQIVVAGMISQEGKITYVEDIAKGIESGPDALVAIFTGKSCGKQ 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03999 1127 Gene3D - 824 989 IPR035897 -
Tsu05g03999 1127 PANTHER HEAT SHOCK PROTEIN 70KDA 6 556 IPR013126 GO:0005524|GO:0140662
Tsu05g03999 1127 SUPERFAMILY Actin-like ATPase domain 11 193 IPR043129 -
Tsu05g03999 1127 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 6 556 - -
Tsu05g03999 1127 CDD HSPA1-2_6-8-like_NBD 12 394 - -
Tsu05g03999 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 816 IPR027417 -
Tsu05g03999 1127 ProSiteProfiles TIR domain profile. 821 983 IPR000157 GO:0007165
Tsu05g03999 1127 Coils Coil 273 293 - -
Tsu05g03999 1127 SUPERFAMILY Actin-like ATPase domain 203 393 IPR043129 -
Tsu05g03999 1127 Gene3D - 754 823 IPR042197 -
Tsu05g03999 1127 Pfam Hsp70 protein 12 562 IPR013126 GO:0005524|GO:0140662
Tsu05g03999 1127 Gene3D - 1056 1094 - -
Tsu05g03999 1127 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 567 IPR029047 -
Tsu05g03999 1127 SMART till_3 822 962 IPR000157 GO:0007165
Tsu05g03999 1127 Pfam NB-ARC domain 610 821 IPR002182 GO:0043531
Tsu05g03999 1127 ProSitePatterns Heat shock hsp70 proteins family signature 1. 14 21 IPR018181 -
Tsu05g03999 1127 Pfam TIR domain 823 981 IPR000157 GO:0007165
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 148 168 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 216 226 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 376 396 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 10 23 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 484 500 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 344 360 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 403 422 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 38 50 - -
Tsu05g03999 1127 PRINTS 70kDa heat shock protein signature 60 68 - -
Tsu05g03999 1127 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 400 545 IPR029047 -
Tsu05g03999 1127 Gene3D - 73 128 - -
Tsu05g03999 1127 Gene3D - 601 749 IPR027417 -
Tsu05g03999 1127 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1056 1095 IPR036291 -
Tsu05g03999 1127 ProSitePatterns Heat shock hsp70 proteins family signature 3. 347 361 IPR018181 -
Tsu05g03999 1127 Gene3D - 201 373 - -
Tsu05g03999 1127 SUPERFAMILY Toll/Interleukin receptor TIR domain 816 964 IPR035897 -
Tsu05g03999 1127 ProSitePatterns Heat shock hsp70 proteins family signature 2. 210 223 IPR018181 -
Tsu05g03999 1127 Gene3D - 12 391 - -
Tsu05g03999 1127 Gene3D - 1101 1127 - -
Tsu05g03999 1127 Gene3D Actin; Chain A, domain 4 242 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03999 Tsu-Chr5 50939975 50944377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03999 4 554 Calmodulin-binding Proteins AT3G12580 79.603 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03999 K03283 - lja:Lj0g3v0120799.1 971.844