Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03994 ATGAACATTGGAACTGATTTTCTTCTTAAACCCATTTTCCTTCATGGGTTATCTAGTTTACTTCATGTAGTGTTGCTTGTGGGGGTTTTAGTTTCACGGGTTtggaaaaaaatcacaatttgtGTTGTGAATGAGTCTAaggaagagaaaaataatagtaCTTTGTTTAAAGTGACAAAGTTTTGTTCTATTGGTTTTTCTGTTTtgaactttgttttgtttttgattaattatttttactgGTATACTAATGGTTGGTCAGAAGAAAAAGTTGTTACCCTTTTTGATTTAGGTTTAAAAACAGTTTCTTGGTttgttatttgtgtttgtttccaTAAAGGGTTCTTGTTTTTCGTCAGTTCaggtgaaagaaaaagaaggtttCCATTCTTTTTTAGAGCTTGGTGTGTCTTCTATCTCATTGTTGCATCTTATTGTTTTGTGGTTGacattgttgttttgtttcaaaatcACATTGAGTTAACTGCTCAATTATTGGTTTCTGATGTAGTGTCTTTTTGTGTTGGTTTGTTCTTTTGTTATGTGGGGTATTTTGTGAGAAATGAGAGTGATGAAGGTGATAGAACTATTCAAGAACCTCTTTTGAATGGTGATACACATGTTGGTAATGGTAATGTTAATCCCTTGGATGCTGGCATTTTGAGCCTTCTCACTTTCACTTGGGTGGGTCCTCTTATAGCATTTGGCAATAAGAAAACCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCAACTTTTAGAGATAAACTTGAAGCTGATTGTGGTGCAGTCAATAGAGTAACCACATTTAAGTTGGTTAAGTCATTGTTAATCTCTGCGTGGAAAGAGATTCTTTTCACTGCTTTTCTTGCATTGTTAAACACTTTAGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTCGTTCAATATCTTGATGGAAGAAGACTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCATTGCAAAGCTTGTAGAATGCTTAACACAAAGGCATTGGTTCTTTAGGTTGCAGCAAATCGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCATGTCAATCAAGACAATGCAACACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTCGGTGTTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCTTTGTtcattttgtataaaaatttggGGCTTGCTTCCATTGCTGCTTTTGTTACTACTGTCATTGTTATGCTGGCAAATGTTCCCTTAGGATCATTGCAAGagaaatttcaaaataagtTGATGGAGTCAAAGGATACTAGAATGAAAACCACATCTGAAATTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACCGAGCTTAGGGATGCTGAACAAGGGTGGTTGAAAAAGTTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCGGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATTTTATTTCAATGATAGCACAGACTAAAGTTTCTCTCGATAGGATCGCTTCGTTCCTTCGACTCGATGACTTGCAATCCGATGTTGTTGAAAAGCTTCCTCCCGGAAGTTCTGATACCGCCATTGAAGTGGTTGATGGAAATTTTTCGTGGGATTTATCTTCACCTAATCCAACGTTGCAGAACATAAATCTCAGAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGTACAGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCTGGCGTCCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAGCACATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCGTGTTCCTTAAAGAAGGATCTGGAAATCTTGTCATTTGGTGATCAGACGGTTATTGGCGAACGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTTGGTGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTCGAGTTCTTACCTACTGCCGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGTACCGATTTTATGGAACTCATAGGCGCACACAGAGAAGCTTTGTCTACACTTGAATCATTCGATGGAGGAAAAACATCTAATGAAATAAGTACATTAGAAAAAGAGGTAAATATCTCCGGCGATCATGAAGAGGTAAACAAAGATGAGAAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTgttcaagaagaagaaagggaGAAAGGTAAAGTTGGATTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGCTCTTGTACCGTTCATATTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCAATCTCAGCCGACGTGGAGGCACCCGTTGAAGGAACAACTCTTATTGAAGTCTACGTTGGTTTGGCCATTGGAAGTTCTTTATGCATTCTTGTTAGAGCATTGTTACTTGTTACAGCCGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTGCATTTTTCGCGCTCCTATGTCATTTTTTGATTCTACTCCAAGTGGACGGATCCTTAATAGGGCTTCAACCGACCAAAGTGCAGTGGATACAGACATACCGTATCAAATTGGCTCATTTGCTTTCTCCTTGATCCAGCTTGTAGGAATTATAATGGTGATGTCTCAGGTTGCATGGCAAGTTTTCATCGTGTTTGTACCTGTGATAGCAGTTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTATGTGGAGTATGCAAAGCCCCGATCATTCAACATTTCGCAGAAACAATTTCTGGTGCTTCAACCATTAGAAGCTTCAATCAACAGTCAAGATTCCATGAAACAAATATGAAACTGACTGATGGATATTCTCGGCCAAAGTTCAGTATTGCTGCTGCTATGGAATGGCTATGCATTCGCTTAGATATGTTGTCTGCCTTCACATTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCCGGAATCATAAATCCAGGCATTGCTGGTCTAGCGGTTACCTATGGTCTAAATTTAAACATGATACAAGCTTGGGTGATTTGGAATCTTTGTAACTTAGAGAACAAAATTATATCGGTTGAAAGGATGCTTCAGTATACAACCATTCCTAGTGAGCCTCCGCTTgttttagaagaagaaaaaaggccAGATCCTTCTTGGCCCGCATATGGCGAGGTTGATATTCGAAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTCGTGTTGCGTGGCTTAACATGCACGTTTCGTGGAGGATTGAAAACCGGCATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTTTTTCGACTTGTTGAACCTACTGCTGGGGAAGTTATCATCGACAGCATCAACATCTCTACAATTGGACTGCATGATTTGAGATCTAGACTAAGCATTATTCCGCAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGCAATCTCGACCCTCTTGAAGAGTACACTGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAGGAAAGAAGGAAAGCTCGACTCTTCAGTTAGTGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTTTGCCTTGGTAGGGTTCTTCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAGCATTTCACTGACTCTACAGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAATATGACTCCCCAACCACACTGCTAGAGAATAAGTCATCATCTTTTTCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCCAATTTTGAGAAATCTGTTGATCACTAA 4449 0.3742 MNIGTDFLLKPIFLHGLSSLLHVVLLVGVLVSRVWKKITICVVNESKEEKNNSTLFKVTKFCSIGFSVLNFVLFLINYFYWYTNGWSEEKVVTLFDLGLKTVSWFVICVCFHKGFLFFVSSGERKRRFPFFFRAWCVFYLIVASYCFVVDIVVLFQNHIELTAQLLVSDVVSFCVGLFFCYVGYFVRNESDEGDRTIQEPLLNGDTHVGNGNVNPLDAGILSLLTFTWVGPLIAFGNKKTLDLEDIPQLDSGDSVVGAFPTFRDKLEADCGAVNRVTTFKLVKSLLISAWKEILFTAFLALLNTLASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIAKLVECLTQRHWFFRLQQIGLRFRALLVTMIYNKALTLSCQSRQCNTSGEIINFMTVDAERVGVFSWYIHDLWLVVLQVTLALFILYKNLGLASIAAFVTTVIVMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQEPIYNLPDFISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWDLSSPNPTLQNINLRVFQGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELIGAHREALSTLESFDGGKTSNEISTLEKEVNISGDHEEVNKDEKNGDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISADVEAPVEGTTLIEVYVGLAIGSSLCILVRALLLVTAGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLIQLVGIIMVMSQVAWQVFIVFVPVIAVSIWYQRYYLPSARELSRLCGVCKAPIIQHFAETISGASTIRSFNQQSRFHETNMKLTDGYSRPKFSIAAAMEWLCIRLDMLSAFTFAFSLIFLISIPPGIINPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERMLQYTTIPSEPPLVLEEEKRPDPSWPAYGEVDIRNLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLENKSSSFSKLVAEYTMRSNSNFEKSVDH 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03994 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1234 1466 IPR003439 GO:0005524
Tsu05g03994 1482 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 103 1478 - -
Tsu05g03994 1482 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 103 1478 - -
Tsu05g03994 1482 SMART AAA_5 1258 1450 IPR003593 -
Tsu05g03994 1482 SMART AAA_5 635 808 IPR003593 -
Tsu05g03994 1482 SUPERFAMILY ABC transporter transmembrane region 283 587 IPR036640 GO:0005524|GO:0016021
Tsu05g03994 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 608 831 IPR003439 GO:0005524
Tsu05g03994 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03994 1482 CDD ABCC_MRP_domain2 1230 1450 - -
Tsu05g03994 1482 Pfam ABC transporter transmembrane region 294 560 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03994 1482 Pfam ABC transporter transmembrane region 914 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03994 1482 CDD ABC_6TM_ABCC_D1 295 582 IPR044746 GO:0140359
Tsu05g03994 1482 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524
Tsu05g03994 1482 Gene3D ABC transporter type 1, transmembrane domain 272 589 IPR036640 GO:0005524|GO:0016021
Tsu05g03994 1482 Gene3D ABC transporter type 1, transmembrane domain 875 1212 IPR036640 GO:0005524|GO:0016021
Tsu05g03994 1482 CDD ABCC_MRP_domain1 608 808 - -
Tsu05g03994 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 914 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03994 1482 Gene3D - 1214 1468 IPR027417 -
Tsu05g03994 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 830 IPR027417 -
Tsu05g03994 1482 Pfam ABC transporter 626 760 IPR003439 GO:0005524
Tsu05g03994 1482 Gene3D - 590 843 IPR027417 -
Tsu05g03994 1482 CDD ABC_6TM_ABCC_D2 912 1206 IPR044726 GO:0140359
Tsu05g03994 1482 MobiDBLite consensus disorder prediction 857 888 - -
Tsu05g03994 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1458 IPR027417 -
Tsu05g03994 1482 SUPERFAMILY ABC transporter transmembrane region 912 1213 IPR036640 GO:0005524|GO:0016021
Tsu05g03994 1482 Pfam ABC transporter 1250 1397 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03994 Tsu-Chr5 50888327 50894748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03994 608 838 Calmodulin-binding Proteins AT2G36910 30.315 2.82e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03994 - K05666 gmx:100811245 2405.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03994 05 50888327 50894748 Tsu03g01110 03 10385893 10392849 PCT