Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03993 ATGACTATTGATGCTGAAAGAGTCGGCATTTTCAGTTGGTACATCCATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCATTGCtcattttgtataaaaatttggGGCTTGCTTCCATTGCTGCTTTTGTCACTACTATCATTGTTATGCTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAATCAAAGGATACTAGAATGAAAACCACATCTGAAATTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACGGAGCTTAGGGATGCCGAACAAGGGTGGTTGAAAAAGTTTCTTTATACTTCAGCCTTGACTGAATTTGTCTTCTGGGGTGCTCCTACATTGGTATCAGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCGCACTTGAATCAGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATTTAATTTCAATGACAGCACAAACTAAAGTTTCTCTCGATAGGATCGCGTCGTTCCTTCGTCTCGATGACTTGCCATCCGATGTTGTTGAAAATCTTCCTCCGGGAAGTTCTGATACCGCCATTGAAGTGGTTGATGGAAATTTTTCGTGGGATTTATCTACACCTAATCCAACGTTACAGAACATAAATCTCAGAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGTACAGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCTGGCGTCCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAGCACATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCGTGTTCCTTAAAGAAAGATCTGGAAATCTTGTCATTTGGTGATCAAACGGTCATAGGCGAACGTGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATTCAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTTGGTGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCCGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGGACCGATTTTATGGAACTCATCGGCGCACACAAAGAAGCTTTGTCTGCACTTGAATCATTCGATGGAGGAAAAACATCTAATAAAATAAGCACATTAGAAAAAGATGTAAATATATCCGGCGCTCATGAAGAGGTAAACAAAGATGAGGAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTgttcaagaagaagaaagggaGAAAGGTAAAGTTGGATTTTCAGCCTATTGGAAGTATATCACAACTGCGTATGGAGGAGCTCTTGTACCGTTCATATTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCTGACGTGGAGGCACCCGTTGAAGGAACAACTCTTATTGAAGTCTATGTTGGTTTGGCAATTGGAAGTTCTTTATGCATTCCTGTTAGAGCATTGTTACTTGTTACAGCCGGTTATAAGACGGCTACTATACTCTTCAATAAAATGCACCTGTGCATCTTTCGCGCTCCTATGTCATTTTTTGATTCTACTCCAAGTGGACGGATCCTTAATAGGGCTTCAACCGACCAAAGTGCAGTGGATACAGACATACCGTATCAAATAAGCTCATTTGCTTTCTCCTTGATCCAGCTTATAGGAATTATAATGGTGATGTCTCAGGTTGCATGGCAAGTTTTCATCGTGTTTGTACCCGTGATAGCAGTTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTAGGTGGAGTATGCAAAGCCCCGATCATTCAACACTTCGCAGAAACAATTTCTGGTGCTTCAACCATTAGAAGCTTCGATCAACAATCAAGATTCCATGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATACTGCTGCTGCTATGGAATGGCTATGCTTTCGCTTAGATATGTTGTCTTCCTTCACATTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCCGGAGTCATAAATCCAGGCATTGCTGGTCTAGCGGTTACGTATGGTCTAAATTTAAACAGGACACAAGCTTGGGTGATTCGGTATCTTTGTAACTTAGAGAACAAAATTATATCGGTGGAAAGGATGCTTCAGTATACAACCATTCCTAGTGAGCCTCCCCTTGTtttagaagaagagaaaaggCCGGATCCTTCTTGGCCTGCATATGGTGAGGTTAATATACGAAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTCGTGTTGCGTGGCCTAACATGCACGTTTTGTGGAGGATTGAAAACCGGCATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTTTTTCGACTCGTTGAACCTACTGCTGGGGAAGTTATCATCGACAGCATCAACATCTCTACAATTGGACTGCATGATTTGAGGTCTAGACTAAGCATTATTCCGCAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGCAATCTTGACCCTCTTGAAGAGTATACTGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGttagaaagaaagaaggaaagcTCGACTCTTCAGTTAGTGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTTTGCCTTGGTAGGGTTCTTCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAGCATTTCACTGACTCTACAGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACATTACTAGAGGATAATTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAGCTCCAATTTTGAGAAATCTTGA 3258 0.3993 MTIDAERVGIFSWYIHDLWLVVLQVTLALLILYKNLGLASIAAFVTTIIVMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYTSALTEFVFWGAPTLVSVVTFGTCMLIGIALESGKILSALATIRILQEPIYNLPDLISMTAQTKVSLDRIASFLRLDDLPSDVVENLPPGSSDTAIEVVDGNFSWDLSTPNPTLQNINLRVFQGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELIGAHKEALSALESFDGGKTSNKISTLEKDVNISGAHEEVNKDEENGDKGEPKGQLVQEEEREKGKVGFSAYWKYITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISADVEAPVEGTTLIEVYVGLAIGSSLCIPVRALLLVTAGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQISSFAFSLIQLIGIIMVMSQVAWQVFIVFVPVIAVSIWYQRYYLPSARELSRLGGVCKAPIIQHFAETISGASTIRSFDQQSRFHETNMKLTDGYSRPKFNTAAAMEWLCFRLDMLSSFTFAFSLIFLISIPPGVINPGIAGLAVTYGLNLNRTQAWVIRYLCNLENKIISVERMLQYTTIPSEPPLVLEEEKRPDPSWPAYGEVNIRNLQVRYAPHLPLVLRGLTCTFCGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLEDNSSSFAKLVAEYTMRSSSNFEKS 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03993 1085 CDD ABC_6TM_ABCC_D1 1 188 IPR044746 GO:0140359
Tsu05g03993 1085 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 840 1072 IPR003439 GO:0005524
Tsu05g03993 1085 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 214 437 IPR003439 GO:0005524
Tsu05g03993 1085 SUPERFAMILY ABC transporter transmembrane region 518 819 IPR036640 GO:0005524|GO:0016021
Tsu05g03993 1085 Pfam ABC transporter 856 1003 IPR003439 GO:0005524
Tsu05g03993 1085 Pfam ABC transporter 232 366 IPR003439 GO:0005524
Tsu05g03993 1085 Gene3D ABC transporter type 1, transmembrane domain 1 196 IPR036640 GO:0005524|GO:0016021
Tsu05g03993 1085 Gene3D ABC transporter type 1, transmembrane domain 481 818 IPR036640 GO:0005524|GO:0016021
Tsu05g03993 1085 CDD ABCC_MRP_domain2 836 1056 - -
Tsu05g03993 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 436 IPR027417 -
Tsu05g03993 1085 MobiDBLite consensus disorder prediction 468 491 - -
Tsu05g03993 1085 Gene3D - 203 454 IPR027417 -
Tsu05g03993 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 1064 IPR027417 -
Tsu05g03993 1085 ProSitePatterns ABC transporters family signature. 339 353 IPR017871 GO:0005524
Tsu05g03993 1085 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03993 1085 Pfam ABC transporter transmembrane region 520 762 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03993 1085 Pfam ABC transporter transmembrane region 2 167 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03993 1085 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 520 800 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu05g03993 1085 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1084 - -
Tsu05g03993 1085 CDD ABCC_MRP_domain1 214 414 - -
Tsu05g03993 1085 Gene3D - 820 1074 IPR027417 -
Tsu05g03993 1085 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 1084 - -
Tsu05g03993 1085 SMART AAA_5 864 1056 IPR003593 -
Tsu05g03993 1085 SMART AAA_5 241 414 IPR003593 -
Tsu05g03993 1085 CDD ABC_6TM_ABCC_D2 518 812 IPR044726 GO:0140359
Tsu05g03993 1085 SUPERFAMILY ABC transporter transmembrane region 8 200 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03993 Tsu-Chr5 50871205 50876635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03993 214 465 Calmodulin-binding Proteins AT2G36910 29.455 3.44e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03993 - K05666 gmx:100777836 1861.66