Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03983 atggCTACATTTTCATCTCTTTACCCTTACAATCCTATGTTCTTCGTTCCAACTCCTTCTTCAAATTATCCTTTTGCTTCTTCGTTTCTGCGACGAAGCAAATTCACTGTTCTTTCATCTCATTCCAATCCCAAAATTCTCAAGACCAACAGAAAATCAATTTATGGGAAAACAATCTCGCCGTATGATTCCGATGAAGAAATggacgaagatgatgatgatgatgatgattggtTCTCTGATGATGAGGAATTTGCTGAGCCTGCTGAACTTGATCCTAAAGTCAAGAGATTGAAGTCAAAGACGCTTGCAGCTGAAACAGATAGACAACAGAACATGGAAAAGGATAAGGATGTGAGATCTCTTAAAAATGGACAAAGCAATAGATTGCCCAAAAGTCGGAGAATTGCATCGTTACAAGAAAATAACAGTGCAAAGTTTGGTAGAAATTCTAAGGAGAAAAGGTATCCGGAGTTGTCTGATGTGATTGTTTTGGACGTGAATTGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTTGTCCAAATTTACGAGAGGCACATGTCATCGTTTCAAATTAATGTAAATTCTGCACAAGAAAGGATTGATTACTTATTGAGTCTCGGGGTTAAACGTACAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTTGAATATACGGTGGAGAACAATTTGAAGACACACGTCGCTTTCTTGATGGGTTTGGGCGTACCTAGTTCCAAATTAGGGCAAATTATTGCTTCTACTCCATCCATTTTTTCTTATAGTGTTGAGAACTCGTTAAAACCAACGGTGAGATATTTAATTGAAGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTTATGTTCCTTACTAAAGAGTTGGGTGCGCCAAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTCCATTACAGCATTGATGATGGATTTCTGCCAAGAATAAATTTCTTACGGAGCATAGGAATGAAAAATGCAGACATCTTGAAAATCTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAGGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAACTTCACAATGAGGTGAAATCCTTGACTAAATACCCAATGTACCTTAGCTTATCTTTGGAGCAGAGAATTCGTCCTCGTCATACGTTCTTGGTTTCCTTGAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACAGATGAAGCCTTTTGTCAACAGTGGGCTGGAACTACTCTTGATAAATATTTGGCATTTCGCCAGAGATTATTGCTCAAAAAGTTTGCCGATAAATATGACAAAAATGTGAAAAGATAA 1452 0.3705 MATFSSLYPYNPMFFVPTPSSNYPFASSFLRRSKFTVLSSHSNPKILKTNRKSIYGKTISPYDSDEEMDEDDDDDDDWFSDDEEFAEPAELDPKVKRLKSKTLAAETDRQQNMEKDKDVRSLKNGQSNRLPKSRRIASLQENNSAKFGRNSKEKRYPELSDVIVLDVNWLPLLDYLSTFGIKESQFVQIYERHMSSFQINVNSAQERIDYLLSLGVKRTDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSSKLGQIIASTPSIFSYSVENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRFMFLTKELGAPKESIVKMVTKHPQLLHYSIDDGFLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVKSLTKYPMYLSLSLEQRIRPRHTFLVSLKKAPKGPFPLGSLVPTDEAFCQQWAGTTLDKYLAFRQRLLLKKFADKYDKNVKR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03983 483 MobiDBLite consensus disorder prediction 124 146 - -
Tsu05g03983 483 MobiDBLite consensus disorder prediction 57 81 - -
Tsu05g03983 483 Gene3D Transcription termination factor 3, mitochondrial 238 468 IPR038538 -
Tsu05g03983 483 Gene3D Transcription termination factor 3, mitochondrial 149 237 IPR038538 -
Tsu05g03983 483 MobiDBLite consensus disorder prediction 64 81 - -
Tsu05g03983 483 PANTHER CGI-12 PROTEIN-RELATED 26 473 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 MobiDBLite consensus disorder prediction 98 123 - -
Tsu05g03983 483 MobiDBLite consensus disorder prediction 98 150 - -
Tsu05g03983 483 Pfam mTERF 163 429 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 258 290 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 401 432 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 295 327 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 368 400 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 187 217 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 SMART mt_12 332 363 IPR003690 GO:0003690|GO:0006355
Tsu05g03983 483 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 26 473 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu05g03983 mTERF 2.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03983 K15032 - gmx:102660933 665.996