Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03978 ATGGAGCTTCACATCCCTTTCTCTAATATTACCTTCATGGCCTCCTTTCTCTTTATCTTATTGTTATTCAAAATAGTTAAAAGATGGAGATGTAACAATTCTACCATGAATTTACCACCAGGACCATGGACACTACCTTTCATAGGAAACATACATCAGGTTATCAGTAACTCATTGCCTCATCACTGCTTCAAAGATTTGGCAGAGAAATATGGACCCTTAATGCACCTAAAACTAGGAGAGGtatcatatataatagttaGTTCACCAGAAATGGCCAAAGAGATTATGAAAACAAATGACCTTACCTTTTGTGATAGGCCAAACCTTCTTTTATCCACAATACTTACTTACAATGCTACTGATATTATATTCTCTATATATGGAGAACATTGGAGGCAACTACGAAAGATATGTGTTATAGAGCTATTAAGTGTAAAGCGTGTCCAATCATTTAGATCCATACGAGAAGAAGAGGTGTCAGATCTTGTTAAATCAATATCTGCAAGTGAAGGATCAGTTGTTAATCTTACTCATAAGATTTTCGCAATGACATATGGGATAACAGAGCGTGCGGCTTTTGGTAAAAAGAGCAAACACCAACAAGCGTTCAAATTAGCGATAGAGGAAATAGTATTTTTGTTGGGAGGAAATTGTATTGTTGATTTGTATCCTTCTATTAAAATGCTTCAAAGGGTGAGTTGGGCGAAAACCAAAATGGAAAAACTTCACAAAGAGATTGATATGATGTTGCAAGACATCATCGACGATCACAAAAAAGTTCACAATGAAGAAAGCAAGGATGAAGATCTAGTAGATGTTCTtctcaaaattcaaaaagaaaatgatcaCTCACAACATCCCTTGACTGATGATGGTATTAAATCAGTCATTCTGGACTTGTTCACTGGTGGTGGCGAAACATCGTCAGGGGCTGTGCTATGGGGAATGTCTGAGATGGTAAAGAACCCAAAAGTGATGGAAGAAGCACAAGCTGAGGTAAGAAGAGTGTTTGATGGAAAGGGTTTTGTGGACGAGACAGAGTTGCACCAACTGATATACTTAAAGTCTGTCATCAAAGAAACACTGAGACTACATCCTACCATACCGCTGTTAGTTCCAAGAGAAAGTAGAGAGAGATGCCAAATCAATGGATATGAGATTCCAGAAAAGACAAGGGTCATGGTTAATGCTTGGGCTATTGGAAGAGATCCAAGGTATTGGGTTGATGCCGAGAGTTTTAAACCTGAGAGGTTTGTTAATAGCTCGATTGATTTCAAAGGCACAGACTTTGAATATATTCCATTTGGTGCGGGAAGGAGGATGTGTCCTGGCATTGAATTTGCCATATCCATCGTTGAACTACCTCTTGCTCAGTTACTTTACCACTTTGATTGGAAGCTTCCCAATGAAATGAAGAATGAAGAACTTGATATGACCGAGTCATTTGGACTTAGTGTAGGAAGAAAACATGATTTATGCTTGATTCCTATTACTCGTTGTacttaa 1509 0.3724 MELHIPFSNITFMASFLFILLLFKIVKRWRCNNSTMNLPPGPWTLPFIGNIHQVISNSLPHHCFKDLAEKYGPLMHLKLGEVSYIIVSSPEMAKEIMKTNDLTFCDRPNLLLSTILTYNATDIIFSIYGEHWRQLRKICVIELLSVKRVQSFRSIREEEVSDLVKSISASEGSVVNLTHKIFAMTYGITERAAFGKKSKHQQAFKLAIEEIVFLLGGNCIVDLYPSIKMLQRVSWAKTKMEKLHKEIDMMLQDIIDDHKKVHNEESKDEDLVDVLLKIQKENDHSQHPLTDDGIKSVILDLFTGGGETSSGAVLWGMSEMVKNPKVMEEAQAEVRRVFDGKGFVDETELHQLIYLKSVIKETLRLHPTIPLLVPRESRERCQINGYEIPEKTRVMVNAWAIGRDPRYWVDAESFKPERFVNSSIDFKGTDFEYIPFGAGRRMCPGIEFAISIVELPLAQLLYHFDWKLPNEMKNEELDMTESFGLSVGRKHDLCLIPITRCT 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03978 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Tsu05g03978 502 PANTHER CYTOCHROME P450 71B11-RELATED 11 500 - -
Tsu05g03978 502 SUPERFAMILY Cytochrome P450 39 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 Pfam Cytochrome P450 39 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu05g03978 502 PANTHER CYTOCHROME P450 71D10 11 500 - -
Tsu05g03978 502 Gene3D Cytochrome P450 31 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03978 Tsu-Chr5 50732941 50747481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03978 13 498 Cytochrome P450 AT5G25120 41.785 3.75e-132 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03978 - K23806 gmx:606548 654.055