Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03976 ATGCAAACATCTTTTAAACATAAAATGTCATATGATTCTGACATGTTCAACATCGACTCAGTACAAAACATAGACTCATATTGCTTCGTGCAAAATGAGAATCACGAAAACTACTCATCTTCTGATAACAGTAGCCACTCAACTTACCCTTCATTTCAAGCTTTAGACCAATATTCCAACTTTGAATCTTCTAACAATAGTCCAGTCTCCAAGCTACAGTCAAACTCTTACGCGTTCACATCGCAAAACTCTCTTGAAATTATCAATGATTTGTTAGAGAACGAACTTTGTTCGACACATACCCAAGATGACGTGTGGCACAAGACGAGAGAGCTTGAAAATGCTATGCTAGGACATGATGCAGCAGATATTCTAGACATATATAATGATATGGTAATGATTCCAGAAGAATCGGAATCTGATCCGCTTTTGTTAGAGGCGGAAAAGTGGAAGAAAATGATGGAGATGATATCTCGAGGGGATTTGAAAGAAATGCTTTTCACTTGTGCAAAAGCAATATCAGAAAATGATATAGAAACAACTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGCAATCCAATACAAAGGTTAGGAGCATACATGCTGGAAGCTCTTGTTGCGAGAATAGCTTCTTCAGGAAGCATAATCTACAAATCATTGAGATGTAAAGAACCTAAACCTGCTACTAGTAAAGAACTCCTTTCGCACATGCACGTGCTTTACGAAATTTGTCCTTACCTCAAATTTGGATACATGTCAGCAAATGGAGTAATTGCTGAAGCTTTGAAGGATGAAAATGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAATGGATAAGTCTAATCCAAGCACTTGCTGGAAAACCTGGAGGACCGCCGAAGATTAGAATAACTGGTTTCGATGATTCAACTTCAGCTTATGCTAGAGGAGGAGGGCTTGATATTGTTGGAGAAAGGTTATCAAAACATGCACAATCATATAATGTAGAATTTGAGTTTCATGCTATAGGGGCTAATCCTACTGAGGTGAAACTCGAAGACCTTAAACTTCGTCGCGGTGAAGCTATTGCTGTAAATTTTGCTATGATGCTGCATCATGTACCAGATGAAAATGTACATGGTGGTCAAAATCATCGCGAACGGTTAGTGAGATTGGTGAAATGTTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAGCTTCCGTTCTTGCCGCGTTTCGTTGAGACAATGAACTACTACTTGGCGGTTTTTGAATCAATCGATGTTTCTTTGCCAAGGGAGCACAGAGAAAGGATTAACGTGGAACAACACTGTTTGGCTCGCGAAGTTGTTAACCTAGTAGCATGCGAAGGCGCAGAAAGAGTCGAACGTCATGAGGTTCTGAAGAAGTGGAATTCATGTTTCACAATGGCTGGATTCACACCATATCCATTGAGttcttatattaattattcaataaagaATCTTCTAGAAAGTTACCAAGGACAATACACCCTAGAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAAGCACTTGTTACCTCTAGTGCTTGGAGGTGA 1611 0.3873 MQTSFKHKMSYDSDMFNIDSVQNIDSYCFVQNENHENYSSSDNSSHSTYPSFQALDQYSNFESSNNSPVSKLQSNSYAFTSQNSLEIINDLLENELCSTHTQDDVWHKTRELENAMLGHDAADILDIYNDMVMIPEESESDPLLLEAEKWKKMMEMISRGDLKEMLFTCAKAISENDIETTEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLRCKEPKPATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDENEVHIIDFQINQGIQWISLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLDIVGERLSKHAQSYNVEFEFHAIGANPTEVKLEDLKLRRGEAIAVNFAMMLHHVPDENVHGGQNHRERLVRLVKCLSPKVVTLVEQESNTNELPFLPRFVETMNYYLAVFESIDVSLPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWNSCFTMAGFTPYPLSSYINYSIKNLLESYQGQYTLEEKDGALYLGWMNQALVTSSAWR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03976 536 ProSiteProfiles GRAS family profile. 153 536 IPR005202 -
Tsu05g03976 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 535 IPR005202 -
Tsu05g03976 536 Pfam GRAS domain family 162 536 IPR005202 -
Tsu05g03976 536 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03976 Tsu-Chr5 50720528 50724104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03976 1 536 GRAS Transcription Factor Family AT1G50600 55.495 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu05g03976 GRAS 2.2e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03976 - - cam:101502619 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03976 05 50720528 50724104 Tsu05g03976 05 50720528 50724104 ECH
Tsu03g01130 03 10625015 10628377 Tsu05g03976 05 50720528 50724104 PCT