Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03974 ATGGACACTGCCACCACAAACTCCGGCGAACCCCATTGTAGTTCGGAGCTCAGACTCAACGGGGCACCCAATGATCCAAATCGAACTGGGTCGGGTCAAAATTATATGGCAAGATATAAGCTGATGTCTCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGTATCACAATACCTCCGGGGTATAGTCCGACGTCGTTTTTGGAGTCTCCAGTTCTTCTTTCTAACATGAAgGTGGAACCTTCACCGACTACAGGGTCCCTTCTTCAAGCTTTACATTGTTCTATGACTTCTGCTGGTTCTCCTACATTTCCTGTAACCTCTGCATGCTTCAATACCAGCACTGTTAATGGCAGAAAATATAGTTTCTTTGAGTTTAAACCACCTGCTAGAAATATGGTTCCTGCAGACTTCAAAAATCATGTAAGTGAACAATCTACTCAAGTAGAAGGTCAAGGCAAAGGTCAATCATTTCGATCCTCGCCATTAAATGAAAATGAGAAAGCAGATCAATCTAATGAGTTAAGCCTATCATCACCTGTTCAAATGGCTGGTTCCGTGGCTAATTCTCCCGTTGATGTAAATTCGGATGCACATAACCACAAAGGTAACACAGCTAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAATTTCCACGTAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGGTCTCATGACGGTCAAATCACTGAGATAATTTATAAGGGAACACATGATCATCCTAAACCTCAACCGAGCAACCGATACTCCGCTGGTTCTATAATGTCTACCCAAGGAGAGAGATCCGATAATAGGGCATCTTCTTTGGCTGTCCGAGATGACAAAGCATCCAATAGTCCTGAGCAATCAGCTGTTGCAGCCAAAGATCTTAATCTAGATGGTGCTGGATTTGTGTCGACCAAGACAAATGATGAGGTTGATGACGACGATCCTTTCTCAAAGCGAAGAAAAATGGAACTCGGAAACACTGACATTATTCCTGTAGTTAAGCCTATCCGAGAACCACGGGTTGTTGTACAGACTATGAGTGAAGTTGATATATTGGATGATGGATACCGCTGGCGTAAATATGGGCAAAAGGTGGTGAGAGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCCGGGTGCCCCGTTAGGAAACACGTGGAGAGGGCATCACATGATCCGAAAGCTGTAATAACAACATACGAGGGAAAACACAATCATGATGTACCTGCTGCGAAGAGTAGTAGCCATGACATGGGAGGATATGCAGCTTCAAAGATAAAGTTAGAAGAAAGTGATACTATTAGTCTTGACCTTGGGATGGGAATCACCTCTGCAGCTGAAAATAGATCGAACGGGCAAGGGAAAATGCTGCTCTCTGAATTCGGGAATAACAGTCAAACTCACACTAGCAATTCCAATTTCAAGTTTGTACATACCACCTCAGGTCCAGTATACTACGGTGTTCTAAATAACGGTTTGAATCTATTTGGTTCAAGAGAAAATAGGAACGATGGTTCGTCTATAAACCATTCCTCGTATCCTTACTCACAGAACATGGGAAAAATACTAATGGGACCatga 1659 0.4286 MDTATTNSGEPHCSSELRLNGAPNDPNRTGSGQNYMARYKLMSPAKLPISRSPCITIPPGYSPTSFLESPVLLSNMKVEPSPTTGSLLQALHCSMTSAGSPTFPVTSACFNTSTVNGRKYSFFEFKPPARNMVPADFKNHVSEQSTQVEGQGKGQSFRSSPLNENEKADQSNELSLSSPVQMAGSVANSPVDVNSDAHNHKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSIMSTQGERSDNRASSLAVRDDKASNSPEQSAVAAKDLNLDGAGFVSTKTNDEVDDDDPFSKRRKMELGNTDIIPVVKPIREPRVVVQTMSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKSSSHDMGGYAASKIKLEESDTISLDLGMGITSAAENRSNGQGKMLLSEFGNNSQTHTSNSNFKFVHTTSGPVYYGVLNNGLNLFGSRENRNDGSSINHSSYPYSQNMGKILMGP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03974 552 MobiDBLite consensus disorder prediction 142 218 - -
Tsu05g03974 552 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 SMART WRKY_cls 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 Gene3D WRKY domain 360 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 Gene3D WRKY domain 197 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 MobiDBLite consensus disorder prediction 323 342 - -
Tsu05g03974 552 MobiDBLite consensus disorder prediction 1 33 - -
Tsu05g03974 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 532 IPR044810 GO:0003700
Tsu05g03974 552 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 31 532 - -
Tsu05g03974 552 MobiDBLite consensus disorder prediction 142 217 - -
Tsu05g03974 552 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu05g03974 552 MobiDBLite consensus disorder prediction 261 317 - -
Tsu05g03974 552 MobiDBLite consensus disorder prediction 270 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03974 Tsu-Chr5 50710291 50714474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03974 42 552 WRKY Transcription Factor Family AT4G26640 55.390 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu05g03974 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03974 - - gmx:100816583 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03974 05 50710291 50714474 Tsu05g03974 05 50710291 50714474 ECH
Tsu03g01131 03 10629800 10636385 Tsu05g03974 05 50710291 50714474 PCT