Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03969 ATGCCAAGTGTTAACCCCGATTCGTCCGACAAAGATTCAGAGGCATTTGAGGAGACGGATCCAACTGGTCGATATGGTAGATACAGCGAACTATTAGGATGTGGTGCCGTGAAGAAAGTGTACCGTGCATTCGATCAAGAAGAAGGAATAGAGGTAGCATGGAACCAAGTGAAGCTAAGGAACTTTTGTGATGAACCTGCTATGGTAGGGAGGCTTTATTCTGAAGTGAGGTTGTTGAGAAGCTTatcaaacaaaaacatcattgaACTTTATAGTGTATGGACCGATGATAAAAACAACACGCTCAATTTCATCACCGAGGTTTGTACTAGCGGGAATTTGAGAGAGTATAGGAAGAAACATAGGCATGTTTCGATGAAAGCATTGAAGAAATGGTCTAGGCAGATTTTGAGAGGGTTGAATTATTTGCACACTCATGAGCCTTGCATCATTCATAGAGATCTCAATTGCAGTAATGTGTTTGTTAATGGGAATGTTGGCAAGGTTAAAATCGGTGACTTGGGTTTAGCAGCAATTGTTGGGAAGAATCATATTGCGCACACAATTCTTGGTACGCCGGAGTTTATGGCACCGGAATTATACGACGAAGACTACACAGAATTGGTGGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTGACATTGGAAATTCCTTATAGCGAATGTGACAATGTTGCACAGATATACAGGAAAGTGTCTTCCGGTATAAGACCTGCTGCATTGAACAAGGTCAAAGATTCTGAGGTAAAGGATTTCATTGAGAAGTGTCTTACTCAACCAAAGGCTAGACCTTCGGCTGCTGAGCTTCTCCAAGATCCTTTCTTTGATGAACTTGTcggtgaagaagatgatgatgacgaAAATGGTGACTATGTTTGTTCATACTAA 915 0.3945 MPSVNPDSSDKDSEAFEETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDEPAMVGRLYSEVRLLRSLSNKNIIELYSVWTDDKNNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSRQILRGLNYLHTHEPCIIHRDLNCSNVFVNGNVGKVKIGDLGLAAIVGKNHIAHTILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAQIYRKVSSGIRPAALNKVKDSEVKDFIEKCLTQPKARPSAAELLQDPFFDELVGEEDDDDENGDYVCSY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03969 304 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03969 304 PIRSF TyrPK_CSF1-R 119 301 - -
Tsu05g03969 304 PIRSF TyrPK_CSF1-R 26 131 - -
Tsu05g03969 304 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03969 304 CDD STKc_WNK 24 284 - -
Tsu05g03969 304 MobiDBLite consensus disorder prediction 1 22 - -
Tsu05g03969 304 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 1 304 - -
Tsu05g03969 304 SUPERFAMILY Protein kinase-like (PK-like) 22 285 IPR011009 -
Tsu05g03969 304 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Tsu05g03969 304 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Tsu05g03969 304 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03969 Tsu-Chr5 50655033 50656993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03969 5 288 MAP Kinase Kinase Kinase AT5G55560 79.225 8.13e-178 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu05g03969 Pkinase 6.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03969 K08867 - gmx:100816060 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03969 05 50655033 50656993 Tsu05g03969 05 50655033 50656993 ECH
Tsu03g01133 03 10658964 10660760 Tsu05g03969 05 50655033 50656993 PCT