Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03968 ATGAAGAACACAATAGATTTTGCAATGGTTCAATTTCTAAGGagtctatttcacttttctatcATAAGTATTTTCTCTATGATCATGTTATGTTCAAGAGGTGAGTCATTATCAACAGAGTCTCATTCATTCTTTAGTTTCCTTAAAGCTATTGATCATAATAATGTACTTAACACTAGCAAGATATCATATCCATGTTTGATCAATGGTGTAAGATGTAACTCAAATGCTACCAATATTGTAGAGATAAGGCTTGATAACATGAACCTTAGTGGCATATTTGATGCATATTCACTATGTAGAATCCAAAAGCTAAAAGTTGTTAGTTTAGCTAACAATAATATCAAAGGGACTATTTCAAACTCAATTTTGCATTGTAGAACATTGGTACATTTAAATGTAACAAATAATCAATTGAGTGGTAGGTTACCAAAGTctttaagaaaattgaaatatcttAAGAACTTAGATGTATCTAAGAATAATTTTTCTAAGAATTATATGGCTCAAATTAGTAAGTTAGAGAGTAAAAGTGATTTAGATACAATACAACCAACACCAAGTCCTTTAACTTCCAATAAGACATCTAAAAAACCAATGCATTGGTATGCCAATATTGAAATCTTGTTAGGGTTGGGTTTGGGAATTGGATTGCTTTTATCATCACTATACTTTATGGTAAAGAAATCTTCCAAATTATTGGAAGAGATTGAGGTAAAGAAAAACCATATTGATTCTCCTATAAAAAAGCCTACAACTCATGAGGTGAAATTAAAAGGAGATAGTTGTAATTCAGAACTTGTGTTCTTTGTTGAAGATCATGAGAGGTTCAAACTTGAGGATCTATTAAGAGCTAAAGCTGATTTGAGAAGTGAGAATTTTTGGAGTAGTCTTTTCAAGGTGAAACTTGAGAATAATGTTGAATATGCTGTCAAAAGATTGAAGAATTTGCAGGTATCTTGTGATGAATTTGGAGAAACATTGAGGAAGATAAGTAAAGTGAAGCATCAGAATATTCTCCCCCTTGTTGGTTATCGTTCTACAAATGAAGAAAAACTTATCATTTACAAATATCAAAGCAATGGAAGTTTGCTCAATCTTTTAAATGATTATATAGCAAGGAGAAAAGATTTCCCATGGAAACTTCGCCTCAATATAGCATGCGGAATCGCAAGGGGATTAACATTCATTTATAAGAAGTTGGATGAAGGGGAGGATAATATTATTCCTCATGGAAACATCAAGCTATCAAATATCCTTCTAGATGACAAAAATGAAGCACTAATAGGTGAACATGGTTTATCGAAATTCTTCGAACCAAATAGAGGTACTACTCTCTTTTCCTCCGATGGATACACAGCTCCTGAAAAGAGTTTAACCGAAAAAGGCGATGTATATAGCTTCGGAGTGATTCTACTAGAACTACTAACAGGACAAAGCATAGAAGTCAGTAGAATAGACCTTGTTAGATGGGTGAGATCAATGGTGAGAGAAGAATGGACAGGTGAAGTGTTTGACAAGGAAGTTAGAGAAAATGATGATCAAGGTGCATTTTCATTGTTGAATATTGCTCTCTTGTGTGTGTCACGTTCTCAAGAAAATAGGCCAAATGTTAAAGAAATTTTGAACACAATTGAAGGGGTGATGAATGCACATGAACAACAACAGATGGAACTTTCTGCTTCAAAATGTTGTTCCAATGGAACCAATCAAGAATGTTGTTCCCTTCATCAAATCATACCTGATACATGGGATTCTCCTGGATCAAATTATTGA 1776 0.326 MKNTIDFAMVQFLRSLFHFSIISIFSMIMLCSRGESLSTESHSFFSFLKAIDHNNVLNTSKISYPCLINGVRCNSNATNIVEIRLDNMNLSGIFDAYSLCRIQKLKVVSLANNNIKGTISNSILHCRTLVHLNVTNNQLSGRLPKSLRKLKYLKNLDVSKNNFSKNYMAQISKLESKSDLDTIQPTPSPLTSNKTSKKPMHWYANIEILLGLGLGIGLLLSSLYFMVKKSSKLLEEIEVKKNHIDSPIKKPTTHEVKLKGDSCNSELVFFVEDHERFKLEDLLRAKADLRSENFWSSLFKVKLENNVEYAVKRLKNLQVSCDEFGETLRKISKVKHQNILPLVGYRSTNEEKLIIYKYQSNGSLLNLLNDYIARRKDFPWKLRLNIACGIARGLTFIYKKLDEGEDNIIPHGNIKLSNILLDDKNEALIGEHGLSKFFEPNRGTTLFSSDGYTAPEKSLTEKGDVYSFGVILLELLTGQSIEVSRIDLVRWVRSMVREEWTGEVFDKEVRENDDQGAFSLLNIALLCVSRSQENRPNVKEILNTIEGVMNAHEQQQMELSASKCCSNGTNQECCSLHQIIPDTWDSPGSNY 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03968 591 ProSiteProfiles Protein kinase domain profile. 284 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03968 591 SUPERFAMILY Protein kinase-like (PK-like) 297 545 IPR011009 -
Tsu05g03968 591 PANTHER TYROSINE KINASE FAMILY PROTEIN 22 584 - -
Tsu05g03968 591 Pfam Protein tyrosine and serine/threonine kinase 302 544 IPR001245 GO:0004672|GO:0006468
Tsu05g03968 591 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Tsu05g03968 591 Gene3D Transferase(Phosphotransferase) domain 1 360 572 - -
Tsu05g03968 591 SUPERFAMILY L domain-like 62 176 - -
Tsu05g03968 591 Pfam Leucine Rich Repeat 129 150 IPR001611 GO:0005515
Tsu05g03968 591 PANTHER OS05G0588300 PROTEIN 22 584 - -
Tsu05g03968 591 Gene3D Ribonuclease Inhibitor 39 208 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03968 Tsu-Chr5 50649502 50651676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03968 21 546 Receptor kinase-like Gene Family AT5G53320 30.450 1.03e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu05g03968 PK_Tyr_Ser-Thr 1.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03968 - - gmx:100807491 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03968 05 50649502 50651676 Tsu05g03968 05 50649502 50651676 ECH