Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03958 ATGGCTACCGTGAGAAGCTTGAAAATCAAGACGAGTACCTGCAAACGACTTGTGAAGGAGCTGCATTCTTATGAGAAGGAATTTGAGAGAGAAGCTGCCAAAACAACTGATATGAAGGACAAAGGTGCTGACCCTTATGATCTCAAGCAACAGGAAAATGTGCTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGTCTGGAGGCTGCTTTGGAAGACTTGAAAGGAATTTTGGCTGAGTTCTTGGAGGAGACAGATGAAAAAGAAGGCCCTGAAATTGATGAAGCTCGAAACACCATTGTGGAAGTTGAAAAGAACCCTACTTTTCCTTCGTCGTGCTCGTTTCAACCTCGCCGTTCACTGGCCACTGTTTGTTTGAACCTTAATTCTCGAACTGAAACAACCTCCTTCACCTTCAGTGCTCTCCATTTCGTTCGCCGCTGTTCGTTTTACGAAGTGAGAATCAACCTCACCGGTTTGCCATCTCCATCCACCGTCTCCGAAAAAGTGGCAATGGAAACAGAGGGAGAGAATCATCACATAGTGAAAGCGTTGAACCTACTTCGAAGCAGAATCTGCGACACCGGATTCATTTTCAAGGATTCTCCAGATGGAAACTACAGCAAATTGAAATTCATGATATCAAGTTCAGTGGCAGAGGCCTGCAACAATTCTATTCTTCTCCTCGGTCCACGTGGCTCTGGGAAGCTTGCGATTTTGGATCTTGTCATTCAAGATTTGTTACTTCAATATCCAGACTCCATTTCAGTgGTCAGATTGAATGGGCTGTTGCATAGTGATGACATCTCTGCATTCAAGGAAATAGCTAGGCAGTTATGCATGGAGCATCAATTGCTATTCTCGAAAGCGGCATCATTTGATGACAATTCCCAATTTATGGTAGCTGTGTTAAAGGAATGTGGATTAGCACATAAAtctgtaatttttattttggatgAGTTTGACCTCTTTGCTCAGGGTAAACAGAGGCTACTATATAGCTTGCTAGATGCAATGCAATCAGTATCATCACAAGCTGTAGTACTAGGCATTAGTTGCCGCCTGGATGCAGATCAGCTATTGGAGAAAAGAGTACGATCTCGTTTTTCACATAGAAAGCTGTTGTTCTTACCACCTTCGATAGAAGATTCACAAAGATTATTGGCGCATATGCTGACATTACCAATAGATTTGGGCCTTCCATCTGATTATGCTGTTGAATTTAATAAAAGGGTTCAAAATATTATAGAAGACAAAAAGTTCAAAGAAATCttcaataaatatttgaattttgactCCTCTGTCAAACATCTGTTGAGGTTCCTATTCTACGCAGTCTCTCATATGGATTTGCAGACTGGATTTCTGTCCCGGGAAAACTTTGAAACTGCATTTTCAAGCATCCAGAGACAGCCCAAACTGGAATGTTTAAgaaATTGCTCCATTTTAGAACTTTATATTTTGGTATGCATGAAGAGATTGGAAGTTAAAGAGCAAAGTTTATGTAACTTCAACGCAGTAATGAAAGAGTATAAAAGCATTCACGATTCTTTCCAGACTTCTGACTACTATGCACGGAATGTTTGTTTAAGGGCATTTGAACATCTTATACATCGTGAATTAATATGTTTCTCAGACAATAGAGGACATAGTTTGTCTGTTCAATTTCGTCCTGTAAAGCTCTTAATTTCATCTGGTGAGCTGTATCAGGGATTAAAGGCATATCAGTCATGCCCCGCTATCCTTCAAAAGTTAATAGATTCGTGA 1773 0.4005 MATVRSLKIKTSTCKRLVKELHSYEKEFEREAAKTTDMKDKGADPYDLKQQENVLAESRMMIPDCRKRLEAALEDLKGILAEFLEETDEKEGPEIDEARNTIVEVEKNPTFPSSCSFQPRRSLATVCLNLNSRTETTSFTFSALHFVRRCSFYEVRINLTGLPSPSTVSEKVAMETEGENHHIVKALNLLRSRICDTGFIFKDSPDGNYSKLKFMISSSVAEACNNSILLLGPRGSGKLAILDLVIQDLLLQYPDSISVVRLNGLLHSDDISAFKEIARQLCMEHQLLFSKAASFDDNSQFMVAVLKECGLAHKSVIFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVLGISCRLDADQLLEKRVRSRFSHRKLLFLPPSIEDSQRLLAHMLTLPIDLGLPSDYAVEFNKRVQNIIEDKKFKEIFNKYLNFDSSVKHLLRFLFYAVSHMDLQTGFLSRENFETAFSSIQRQPKLECLRNCSILELYILVCMKRLEVKEQSLCNFNAVMKEYKSIHDSFQTSDYYARNVCLRAFEHLIHRELICFSDNRGHSLSVQFRPVKLLISSGELYQGLKAYQSCPAILQKLIDS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03958 590 Gene3D - 1 110 - -
Tsu05g03958 590 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 390 572 IPR032705 -
Tsu05g03958 590 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 177 590 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Tsu05g03958 590 Pfam Tubulin binding cofactor A 3 101 IPR004226 GO:0007021|GO:0007023|GO:0048487
Tsu05g03958 590 Gene3D - 206 380 IPR027417 -
Tsu05g03958 590 Coils Coil 66 86 - -
Tsu05g03958 590 Coils Coil 14 34 - -
Tsu05g03958 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 404 IPR027417 -
Tsu05g03958 590 CDD AAA 226 374 - -
Tsu05g03958 590 SUPERFAMILY Tubulin chaperone cofactor A 3 101 IPR036126 GO:0007021|GO:0007023|GO:0048487
Tsu05g03958 590 Pfam ATPase family associated with various cellular activities (AAA) 228 374 IPR003959 GO:0005524|GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03958 185 589 Core DNA Replication Machinery Family AT2G01120 64.578 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03958 K02606 - gmx:100800582 666.766