Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03945 ATGGGTTTCCGTTTAAATGTTATTCGACGGGCATCATTAACTGTCAACCAAACAACATCAAAATCTGCAGAAGTGAGAAAGGGCTATGTTGCCGTGTATGTTGGAGAAAAACAGAGGCGGTTTGTGATCCCAATAACATATTTGAACCAACCATTGTTTCAAGAGTTGTTGAGTCAAGCTGAGGACGAGTTTGGATATGATCATCCCTTTTCATGGGAAACAGAAGCGGTTTGTAGTCCATGTGCCTTACTTGAACCAACCTACATTTCAAGAGTTGTTGAGTCAAGCTGA 291 0.4124 MGFRLNVIRRASLTVNQTTSKSAEVRKGYVAVYVGEKQRRFVIPITYLNQPLFQELLSQAEDEFGYDHPFSWETEAVCSPCALLEPTYISRVVESS 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03945 96 Pfam Auxin responsive protein 14 68 IPR003676 GO:0009733
Tsu05g03945 96 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 71 IPR003676 GO:0009733
Tsu05g03945 96 PANTHER AUXIN-INDUCED PROTEIN 6B 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03945 Tsu-Chr5 50350627 50350917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03945 14 95 Calmodulin-binding Proteins AT3G43120 39.024 4.60e-15 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03945 K14488 - gmx:106795238 110.923