Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03942 ATGGGTTTCCGTTTAAATGCTATTCGACGGGCACCAAAATCTGCAGAAGTGAGAAAGGGCTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGATTTATAATCCCTGTATCATACTTGAACCAACCTTCATTTCAAGAATTGTTAAGTCAAGTTGAGGAAGAGTTTGGATATGATCATTCCATGGGTGGATTCACTGTTCCTTGCACCGAAGATggTGTTACACTTCTCATAAGTCTTGAGAAAAGGGAAAGAAGTTTTAGTCACTCATGTGTTGGAAGGTCTTTAGAGGCAATCAGGAAACTTGAGGATGCAATTTTGAAGATAGCTGATGAGATGACTGTTCACATCCTGTGGCCATCAGTTCGTGGATGGTCAATATTTTGTACTACCAAATATTCTATAGAAACCTGTCAGTCCAAGAAAAACTCATATAGGTCAGTGAGTGATTTAGGAATTGGCTATGCCAAAATGTCTTTCACCTTCGTCGAATCAGCTTGTACTCCTCTTCCTGTTATAATACGTCCTAGATAA 534 0.3933 MGFRLNAIRRAPKSAEVRKGYVAVYVGEKQKRFIIPVSYLNQPSFQELLSQVEEEFGYDHSMGGFTVPCTEDGVTLLISLEKRERSFSHSCVGRSLEAIRKLEDAILKIADEMTVHILWPSVRGWSIFCTTKYSIETCQSKKNSYRSVSDLGIGYAKMSFTFVESACTPLPVIIRPR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03942 177 Pfam Auxin responsive protein 12 72 IPR003676 GO:0009733
Tsu05g03942 177 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 76 IPR003676 GO:0009733
Tsu05g03942 177 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 11 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03942 Tsu-Chr5 50340179 50343314 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03942 16 69 Calmodulin-binding Proteins AT3G43120 53.704 1.02e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03942 K14488 - gmx:100780289 121.324