Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03939 ATGGGTTTCCGTTTAAATGCTATTCAACGGGCAACATTAACTTCCAACCAAACAACATCAAAATCTGCAGAAGTGAGAAAGGGCTATATTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTGATCCCAATATCATACTTGAACCAACCTTCATTTCAAGAATTGTTAAGTCAAGTTGAGGAAGAGTTTGGATATGATCATTCCATGGGTGGACTCACCATTCCTTGCACGGAAGACGTCTTCCAACATATAACTTCTTGCTTGAATGGGCTATGGGCTATGAGTCTTACACTGTAG 300 0.4067 MGFRLNAIQRATLTSNQTTSKSAEVRKGYIAVYVGEKQKRFVIPISYLNQPSFQELLSQVEEEFGYDHSMGGLTIPCTEDVFQHITSCLNGLWAMSLTL 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03939 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 7 90 - -
Tsu05g03939 99 Pfam Auxin responsive protein 12 89 IPR003676 GO:0009733
Tsu05g03939 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 7 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03939 Tsu-Chr5 50336203 50336502 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03939 14 89 Calmodulin-binding Proteins AT3G43120 44.737 4.24e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03939 K14488 - gmx:100816803 152.14