Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03934 ATGCCAGAAAATCTTAAAGAACCTCGTCTTGTAGCAAGAAAGTTCCTAGCCAAACCTCAACGAGAAGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGATTTGAGCTGAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTTTCAGTTGCTGCTCCTTCTGGATTTCCTGATCATCCACATAGAGGTTTTGAGACAGTCACATATATGTTACAGGGTGCTGTAAcacatgaagattttgaaggaCACAAGGGAACAATTGAAGCTGGTGACTTACAGTGGATGACTGCTGGAAGAGGGATAGTGCACTCAGAAATGCCTGCAGCTCAAGGAATCCAAAAGGGTCTACAACTTTGGATCAACCTTGCTTCCCAACATAAAATGATTGAACCAAGGTATCAAGAAATTTTAAGCAAGGATATAGTAGAAACTATGAAAGATGGTATCATGGTTAGAGTTATAGCAGGAGAAGCTCTTGGAGTAAAGTCACCAATTTACACAAGAACACCAACAATGTATTTGGATTTTACTCTTAAACCAGGATCACACCTACAACAACTTGTACCAAAATCTTGGAATGCTTTTGTGTACATCTTAGAAGGAGAGGGTATTTTTGGAAACCAAAAATCTCATCCTATAACTTCTCACCATATTCTCCTTCTAAGTTTAGGGGATGGTCTAGAGGCATGGAATAAATCTTCTAAGGTACTTAGGTTTATTTTGGTTGGAGGTGAACCATTAGGTGAACCAATGGTACAATTTGGACCCTTTGTGATGAATACTCAAGAAGAGATTGACCAAActattgatgattttgaaaactATACCAATGGATTTGAAAAAGCCAGACATTGGAGGTCACAAAGTGCAATTGGTTTAGAGTTTTAA 891 0.3715 MPENLKEPRLVARKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPSGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGIQKGLQLWINLASQHKMIEPRYQEILSKDIVETMKDGIMVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGSHLQQLVPKSWNAFVYILEGEGIFGNQKSHPITSHHILLLSLGDGLEAWNKSSKVLRFILVGGEPLGEPMVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSQSAIGLEF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03934 296 Pfam Pirin 28 121 IPR003829 -
Tsu05g03934 296 PANTHER PIRIN-RELATED 4 293 IPR012093 -
Tsu05g03934 296 CDD cupin_pirin_C 171 247 - -
Tsu05g03934 296 Gene3D Jelly Rolls 22 274 IPR014710 -
Tsu05g03934 296 Gene3D Jelly Rolls 143 248 IPR014710 -
Tsu05g03934 296 PIRSF Pirin 7 287 IPR012093 -
Tsu05g03934 296 CDD cupin_pirin_N 26 123 - -
Tsu05g03934 296 Pfam Pirin C-terminal cupin domain 174 278 IPR008778 -
Tsu05g03934 296 PANTHER OS09G0484800 PROTEIN 4 293 - -
Tsu05g03934 296 SUPERFAMILY RmlC-like cupins 9 288 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03934 Tsu-Chr5 50322173 50325583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03934 3 284 Calmodulin-binding Proteins AT3G59220 58.803 5.58e-126 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03934 K06911 - gmx:100790637 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03934 05 50322173 50325583 Tsu05g03934 05 50322173 50325583 ECH