Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03921 ATGGCCAAAAATGCAAAGCGTCTCATAATCGGAATCGACCTCGGCACCACCTACTCTTGCGTCGGAGTCTGGCACCACGACACTGTCCATATAATCACTAACGACCACGGCAACCGGACCACCCCTTCTTACGTCGCTTTCACCGATTCTGAACGCTTAATTGGCGATGCTGCCAAGAGCCAGGTCACCAGGAACCCCCTCAACACCGTCTTCGATGCCAAGCGTTTGATTGGGAAGAAATTCTCTGATGCTTCCGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTTATTGCTGGTACTTCTGACAAGCCCATGATTGTTGTTAACTACAAGAATGAGGAGAAGCACTTCACTGTTGAGGAGATTTCCTCCATGGTCCTCATCAAGATGCGTCAGATCGCCGAGGCTTATCTTGGTTCTGCCGTGAAGGACGTTGTTGTCACTGTTCCAGCATACTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTGTCATTGCCGGCCTTAATGTCATGCAGGGATTCAAGACCTTCATAGATGATGAAGCATTGGAGGGTGGATCCCCAATTGATAAGCTTCTTGAAGCCATTGAAGAGTCAAGGTTTGCAATTGTTGTTTTGTCAGAAAATTTTGCAGACTCTAAATGGTGTCTTAAAGAACTTGTCAAGATTCTTGATTGTCGAAAAAGGAAGAAACAATTggttttgccaattttttatgAAGTGGAACCAACCGACATAAGGCATCTAAAAGGAAGGTATGGTGAAGCTATGGCCGAACATGAAAAAAAGTTAGCCAAAGATTCTAAGACGGTATTGGAATGGACATTAGCTTTGAGTGATATTTCCCAATTGAAAGGAGAACATTTCCGCATTTCGAACTTCAAAGGAGAACATAACGAAAGGAGAACATCTCAGCATTTCCAACTTCAAACGAGAGCATTACGAAAGGCACTTGAAGCCATTGAAAAGCTTCAGAAAACTGTCAATACACTTATTGTGATTCCAAATGACCATTTGCTTGACATAGCTGATGAGCAAATGCCACTTCACGATGCTTTTCGTCTTGCAGATGATGTTTTACGACAAGGAGTTCAGGGAATATCAGGCATTATAACATTCTTTTGTCTAGATCATGTGAACTGTTGTGTTTTCTTCCGGATACCTGGACTTGTGAATGTGGATTTTGCTTATGTAAAAGCTGTGATGAAAGACTCTGGTACTGCAATGCTCGGAGTAGGTGTTTCATCTGGTAAAAACCGTGCAGAAGAAGCAGCAGAACAGGCTACTTTGGCCCCTTTAATTGGATCATCTATTCAGTCAGCCACTGGGGTAGTGTACAATATTACCGGCGGAAAGGACATTACCCTGCAGGAAGTCAACAGGGCATCTCAGGTTGTGACTAGTTTGGCTGATCCTTCTGCCAATATTATATTTGGACTGTTGTTGATCATCGTTACACCGGAGAGATTCATGTGA 1485 0.435 MAKNAKRLIIGIDLGTTYSCVGVWHHDTVHIITNDHGNRTTPSYVAFTDSERLIGDAAKSQVTRNPLNTVFDAKRLIGKKFSDASVQSDMKLWPFKVIAGTSDKPMIVVNYKNEEKHFTVEEISSMVLIKMRQIAEAYLGSAVKDVVVTVPAYFNDSQRQATKDAGVIAGLNVMQGFKTFIDDEALEGGSPIDKLLEAIEESRFAIVVLSENFADSKWCLKELVKILDCRKRKKQLVLPIFYEVEPTDIRHLKGRYGEAMAEHEKKLAKDSKTVLEWTLALSDISQLKGEHFRISNFKGEHNERRTSQHFQLQTRALRKALEAIEKLQKTVNTLIVIPNDHLLDIADEQMPLHDAFRLADDVLRQGVQGISGIITFFCLDHVNCCVFFRIPGLVNVDFAYVKAVMKDSGTAMLGVGVSSGKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRASQVVTSLADPSANIIFGLLLIIVTPERFM 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03921 494 SMART till_3 131 287 IPR000157 GO:0007165
Tsu05g03921 494 CDD FtsZ_type1 315 483 IPR000158 GO:0003924|GO:0005525
Tsu05g03921 494 SUPERFAMILY Actin-like ATPase domain 7 174 IPR043129 -
Tsu05g03921 494 SMART Tubulin_4 205 378 IPR003008 GO:0005525
Tsu05g03921 494 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu05g03921 494 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu05g03921 494 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu05g03921 494 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu05g03921 494 ProSiteProfiles TIR domain profile. 148 321 IPR000157 GO:0007165
Tsu05g03921 494 Pfam FtsZ family, C-terminal domain 409 483 IPR024757 -
Tsu05g03921 494 Pfam Hsp70 protein 9 174 IPR013126 GO:0005524|GO:0140662
Tsu05g03921 494 PANTHER HEAT SHOCK PROTEIN 70KDA 3 175 IPR013126 GO:0005524|GO:0140662
Tsu05g03921 494 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu05g03921 494 SMART Tubulin_C_4 394 494 IPR018316 -
Tsu05g03921 494 Gene3D - 351 489 IPR037103 -
Tsu05g03921 494 SUPERFAMILY Tubulin C-terminal domain-like 391 484 IPR008280 -
Tsu05g03921 494 Gene3D - 176 333 IPR035897 -
Tsu05g03921 494 Gene3D - 10 175 - -
Tsu05g03921 494 Pfam TIR domain 173 301 IPR000157 GO:0007165
Tsu05g03921 494 SUPERFAMILY Toll/Interleukin receptor TIR domain 175 287 IPR035897 -
Tsu05g03921 494 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 3 175 - -
Tsu05g03921 494 Gene3D - 71 126 - -
Tsu05g03921 494 SUPERFAMILY Tubulin nucleotide-binding domain-like 315 376 IPR036525 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03921 Tsu-Chr5 50209587 50216135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03921 1 175 Calmodulin-binding Proteins AT1G56410 80.000 4.01e-95 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03921 K03283 - tcc:18586117 287.73