Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03920 ATGGCCGAAAATGCAAAGCGTCTCATAATCGGAATCGACCTAGGCACCACCTACTCTTGCGTCGGAGTCTGGCACCACGACACTGTCCATATCATCACTAACGACCACGGCAACCGGACCACCCCTTCTTACGTCGCTTTCACTGACTCCGAACGCTTAATTGGCGATGCTGCCAAGATCCAGATCACCAGGAACCCCGTCAACACTGTCTTCGatgcCAAGCGTTTGATTGGAAGGAGATTCTCTGATGCTTCCGTTCAGAATGACATGAAGCTATGGCCTTTCAAGGTTATTGCTGGTACCGCGGACAAGCCTATGATTGTTGTTAACTACAAGAATGAGGAGAAGCACTTCAATGCTGAGGAGATTTCTTCCATGGTCCTTGTCAAGATGCGTCAAATTGCCGAGGCTTATCTTGGTTCCACCGTGAAGGACGTTGTTGTCACTGTTCCAGCATACTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGCTCTAATTGCTGGCCTTAATGTGATGCGTATCATCAACGAACCCACTGCTGCTGCCCTTGCCTATGGCCTTGATATGGAGCCCGATGAGAAGAACGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTTTCTCATCTAACCATTGACGATGGTCTCTTTGAAGTTAATGCCACTGCAGGAGACAACCATCTTGGAGGTGAAGACTTCGATAACAGGATGGTTGagcattttgttgaggagttcaAGCGGAAGCACGAGAAGGAAATTAGTGGGAACCCCAGGGCTTTAAGAAAATTGAGGACCGCATGTGAAAGGGCAAAGAGGATACTCTCATCCACTGTACAAACCACCATTGAGATTGACTCACTGTATGAAGGTACTGACTTCAGTACCACAATCACTCGTGACAGGTTTGAAGAACTCAACATGGACCTCTTCAGCAAATGCATGGACACTGTTGAGCGGTGTTTGAGGGACGCTAAAATGGACAAGAGCAGTGTCCATGATATTGTTCTTGTTGGTGGGTCTACGAGGATCCCAAAAGTGCAACAGTTGTTGCAGGATTACTTCAATGGGAAGGAGCTCTGCAAGAACATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTGTTCAGGCTGCTATCTTGAACCGTGAGAAGATCCAGAAGATTAAGGATCTTGCGTTGGTGGATGTCACTCCCCTTTCACTTGGTGTGGAAACTGCTGGCGGTGTCATGACTGTCCTAATTCAAAAGAACTTTCCAATCCCGTACATGAAGGAGCAGGTTTTCTCAACCAACTCCGACAACCAGCCTAGTGTGTTGATCAAGGTGTACGAGGGTGAGAGAACCAGGAGCAGGGATAACAACTTGCTAGGTGAATTCGAGCTTTCTGGCATCCTTCCTGCTCCAAGGGGTGTTCCTCATATCAATGTTTGCTTTAGCATTGATATCAATGGTATCATGAATGTCTCTGCTGAAGACCGGACTACTAGGAAGAAAAACTATATCACTATTACAAATGGCGAGGGCAGACTCTCAAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAAGGCTGAGGATGAGGAGCACCAGAAGAACGTTGAGGCCAAGAATGCCTTGGAACAAGAGGTGGAGAGGTTATGTTCTACAAAAGATGCTCCATATCAACACTTGGAGGCACAAGTAAAACATGACACTTGCCATGATCAGATTACATTACCATCCCTAAGTTCAAGTTTACAGTCTTTCCCTTCCGGAAACTTTGGGTATTATTTCAACTCTACAAAATTGGcttcacaaaaaattataaagggaCTAAAAGATGATAATTGCTATGTTGTTGGATTGTATGGAAAGAGAGGCAGTGGTAAAACAGCATTGGTGAAAGCTGAGATGGAAGAGTATGAAAAGATTTTTCGTAGAGTGATATTTCTCTCCGTGTCTGAGAATCAAGATATCAAGAGCATTCGAGTGGGAATTTCCAGCTCCTTGAATGTGTTTAATAAAGATGACAGTGATGGCGCGagaataatgaaaataattttggcATTAGAAAGGAAGGATAGAACTACCCTAGTCATCTTGGATAATTTTCCGTCAAAGTCTAAACTGGAAGAATTAGGAATTCCTTATAATAGCAAACAGTACAAGTTCCTTTTGACCGCACGTGATGAGACAGAGTGCACCTCAATAGGATGTCATCATTTGATTCTTTTGAAGCCCTTATCTGATGAAGAAGCTTTTTCGCTGCTACATAAACTGTCCGGTGTTGAATCCCAAATGGATCTATTTAAAGTGGTACGAGATGTTGCTTTTAAATGCAATGGCTTACCTGGTTTAATTAAAGATGTGGCGTTTTCTTTGAAAAAGAAGCCTATTGAGAAGTGGGAAGAATCCTTTGTCAGTCTAAGCCACTCAACGGCACACTACCAAATTTTTATCAGTTTTAGAGGAAAGGACACTCGGAAGATTTTCACAAATCATCTCTATGAGGCTTTGTGTAAAGAGGGATTCAAGACCTTCATAGATGATGAAGCATTGGAGGGTGGATCCCCGATTGATAAGCTTCTTGAAGCCATTGAAGAGTCAAGGTTTGCAATTGTTGTTTTGTCAGAAAATTTTGCAGACTCTAAATGGTGTCTTAAAGAACTTGTCAAGATTCTTGATTGTCGAAAAAGGAAGAAACAATTggttttgccaattttttatgAAGTGGAACCAACCGACATTAGGCATCTAAAGGGAAGGTATGGTGAAGCTATGGCCGAACATGAAAAAAAGTTAGCCAAAGATTCTAAGACGGTATTGGAATGGACATTAGCTTTGAGTGATATTTCCCAATTGAAAGGAGAACATTTCCGCATTTCCAACTTCAAAGGAGAACATAACGAAAGCTTCCCTTCATCCTCAACTTATTTCATGCGAATATGGATGAATCCAGAAGGTGTCTACACTTTTAAAGCTAATAAACACCTGGAGCTTTTCTGTCACATTTCCAGTTCCAATTCCAGCAGCTACCAACGGGTTCACGGCGATGTTCCCGCTCATGATGACTTTGGCGAGGACTTTACGGCCTGTACAAGAAGGCTGTAA 3108 0.4257 MAENAKRLIIGIDLGTTYSCVGVWHHDTVHIITNDHGNRTTPSYVAFTDSERLIGDAAKIQITRNPVNTVFDAKRLIGRRFSDASVQNDMKLWPFKVIAGTADKPMIVVNYKNEEKHFNAEEISSMVLVKMRQIAEAYLGSTVKDVVVTVPAYFNDSQRQATKDAALIAGLNVMRIINEPTAAALAYGLDMEPDEKNVLIFDLGGGTFDVSHLTIDDGLFEVNATAGDNHLGGEDFDNRMVEHFVEEFKRKHEKEISGNPRALRKLRTACERAKRILSSTVQTTIEIDSLYEGTDFSTTITRDRFEELNMDLFSKCMDTVERCLRDAKMDKSSVHDIVLVGGSTRIPKVQQLLQDYFNGKELCKNINPDEAVAYGAAVQAAILNREKIQKIKDLALVDVTPLSLGVETAGGVMTVLIQKNFPIPYMKEQVFSTNSDNQPSVLIKVYEGERTRSRDNNLLGEFELSGILPAPRGVPHINVCFSIDINGIMNVSAEDRTTRKKNYITITNGEGRLSKEEIEKMVQEAEKYKAEDEEHQKNVEAKNALEQEVERLCSTKDAPYQHLEAQVKHDTCHDQITLPSLSSSLQSFPSGNFGYYFNSTKLASQKIIKGLKDDNCYVVGLYGKRGSGKTALVKAEMEEYEKIFRRVIFLSVSENQDIKSIRVGISSSLNVFNKDDSDGARIMKIILALERKDRTTLVILDNFPSKSKLEELGIPYNSKQYKFLLTARDETECTSIGCHHLILLKPLSDEEAFSLLHKLSGVESQMDLFKVVRDVAFKCNGLPGLIKDVAFSLKKKPIEKWEESFVSLSHSTAHYQIFISFRGKDTRKIFTNHLYEALCKEGFKTFIDDEALEGGSPIDKLLEAIEESRFAIVVLSENFADSKWCLKELVKILDCRKRKKQLVLPIFYEVEPTDIRHLKGRYGEAMAEHEKKLAKDSKTVLEWTLALSDISQLKGEHFRISNFKGEHNESFPSSSTYFMRIWMNPEGVYTFKANKHLELFCHISSSNSSSYQRVHGDVPAHDDFGEDFTACTRRL 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03920 1035 Gene3D - 595 741 IPR027417 -
Tsu05g03920 1035 ProSiteProfiles TIR domain profile. 813 951 IPR000157 GO:0007165
Tsu05g03920 1035 Gene3D - 10 381 - -
Tsu05g03920 1035 Gene3D Actin; Chain A, domain 4 232 315 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 206 216 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 334 350 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 393 412 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 474 490 - -
Tsu05g03920 1035 PRINTS 70kDa heat shock protein signature 366 386 - -
Tsu05g03920 1035 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu05g03920 1035 ProSitePatterns Heat shock hsp70 proteins family signature 3. 337 351 IPR018181 -
Tsu05g03920 1035 Pfam Hsp70 protein 9 569 IPR013126 GO:0005524|GO:0140662
Tsu05g03920 1035 Pfam TIR domain 815 952 IPR000157 GO:0007165
Tsu05g03920 1035 SUPERFAMILY Actin-like ATPase domain 193 383 IPR043129 -
Tsu05g03920 1035 Coils Coil 515 538 - -
Tsu05g03920 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 808 IPR027417 -
Tsu05g03920 1035 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 390 546 IPR029047 -
Tsu05g03920 1035 SUPERFAMILY Actin-like ATPase domain 7 191 IPR043129 -
Tsu05g03920 1035 SMART till_3 814 953 IPR000157 GO:0007165
Tsu05g03920 1035 Gene3D - 818 971 IPR035897 -
Tsu05g03920 1035 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 8 549 - -
Tsu05g03920 1035 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 383 565 IPR029047 -
Tsu05g03920 1035 Gene3D - 192 363 - -
Tsu05g03920 1035 SUPERFAMILY Toll/Interleukin receptor TIR domain 808 953 IPR035897 -
Tsu05g03920 1035 Pfam NB-ARC domain 605 814 IPR002182 GO:0043531
Tsu05g03920 1035 PANTHER HEAT SHOCK PROTEIN 70KDA 8 549 IPR013126 GO:0005524|GO:0140662
Tsu05g03920 1035 Gene3D - 746 817 IPR042197 -
Tsu05g03920 1035 CDD HSPA1-2_6-8-like_NBD 10 384 - -
Tsu05g03920 1035 SMART AAA_5 615 747 IPR003593 -
Tsu05g03920 1035 Gene3D - 71 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03920 Tsu-Chr5 50201935 50205862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03920 1 546 Calmodulin-binding Proteins AT5G02490 79.053 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03920 K03283 - lja:Lj0g3v0120799.1 1032.32