Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03917 ATGGCAGAAAATGCAAAGCGTCTCATAATCGGAATCGACCTCGGCACCACCTACTCTTGCGTCGGAGTCTGGCACCATGGAACTGTCCAAATCATCACCAACGATCACGGCAACCGGACCACTCCTTCTTACGTAGCTTTCACCGACTCGGAACGCTTCATTGGCGATGCTGCCAAGATCCAGGTCACCAGGAACCCTGTCAACACAGTCTTCGATGTCAAGCGTTTGATTGGAAGGAGATTCTCTGATGCTTCTGTTCAGAGTGACATGAAGCTATGGCCATTCAAGGTTATTGCTGGTACTTCCGACAAGCCTATGATTGTTGTTAACTACATGAATGAGGAGAAGCACTTCACTGCTGAGGAGATTTCCTCCATGGTCCTCAACAAGATGCGTCAGATCGCTGAGGCTTATCTTGGTTCCACCGTGAAGGATGTTGTTATCACTGTTCCAGCATACTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTGTCATCGCTGGCCTTAATGTCCTGCGAATCATCAACGAACCCACTGCTGCTGCCCTTGCCTATGGCCTTGATGATATGGAGCCCATCGTCGATGATGAGAAGATCGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTCTTCTAACCATTGAAGATAGTGTGTTTGTAGTTATTGCCACTGCAGGAGACAGCCATCTTGGAGGTGAAGACTTCGATAACAGGATGGTTGAgaattttgttgaggagttcaAGAGGAAGCACGGGAAGGAAATTAGTGGGAACCCAAGGGCTTTAAGAAAGTTGAGGACCGCATGTGAAAGGGCAAAGAGGATACTCTCATCCACTGTACATACCACCATTGAGATTGACTCATTGTATGAAGGTATTGACTTCTATACCACAGTCACTCGTAACAGGTTTGAAGAACTCAACATGGACCTCTTCAGCAACTGCATGGACACCGTTCAGCGGTGTTTGAGGGAAGCTAAAATGGACAAGAGCAGTGTCCATGATATTGTTCTTGTTGGTGGGTCTACGAGGATCCCAAAAGTGCAACAGTTGTTGCAGGATTTCTTCAACGGGAAGGAGCTCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTCTTCAGGCTGCTATCTTGAACCATGAGCAGAGCGAGAAGGTTAAGGATCTTACGTTGGTGGATGTCACTCCCCTTTCACTTGGTGTGGAAACTGTTGGTGGTGTCATGACTGTCCTGATTCGAAAGAACACTACACTCCCATACAGGGAGGAGCAAGTTTTCTCAACCCACTCCGACAACCAGCCTAGTGTGTTGATCAGGGTGTACGAGGGTGAGAGAACCAGGAGCAGGGAGAACAACTTGCTAGGTAAATTTGAGCTTTCTGGCATCCTTCCTGCTCCAAAGGGTGTTCCTAAGATCAATGTTTGCTTTCAAGTTGATGTCAATGGTATCATGACTGTCTCTGCTGAGGACAAGTCTACAGGGAACAAGAACAATATCACTATCACCAATGACAAGGGCAGGGTGTACGAGGGTGAGAGAACCAGGAGCAGGGAGAACAACTTGCTAGGTAAATTTGAGCTTTCTGGCATCCTTCCTGCTCCAAAGGGTGTTCCTAAGATCAATGTTTGCTTTCAAGTTGATGTCAATGGTATCATGACTGTCTCTGCTGAGGACAAGTCTACAGGGAACAAGAACAATATCACTATCACCAATGACAAGGGCAGGCTCTCGAAGGAGGAGATTGAGAAGATGGTACAGGAGGCGGAGAAGTACAAGGCCGAGGATGAGGAGCACAAGAAGAACGTTGAGGCCAAGATTGCCTTGGAACAAGAGTTGGAGAGGTACTGTTTTACCAAAGGTGCTCCAAACTTGGAGCCACAAGTAGAACGTGATACTTGCCGTGATCAGATTCCATTACCATCCCTAAGTTCAAGTTTACAGTCTTTCCCTTCCGGAAACTTTGGGTATTATTTCAACTCTACAAAAAAGGCTTCACAGAAAATTATAGAGGCACTAAAAGATGATACATACTATGTAATTGGATTGCATGGAAAGAAGGGCTCTGGTAAAACATCATTAGTGAAAGCTGAGACGAATGAGTACGAAAAGATTTTTCATAGAGTTATATTTCCCACAGTTTCCAATAACCAAGATGCCAAGTGCATTCAGGAGGGAATTGCTAGCTCGCTGAATGTGCATTTTGAAAGAGATGACAGTGATGGCATGCGagtaatgaaaataattacGGCATTAGAAAAGAAGGATAGGACTATTCTGGTCATTTTGGATAATTTTCCGAAAAAGTCTCAACCGCAGGAATTAGGTATTCCTTTTAATAGCAGACAATGCAAGGTTCTTTTAACCACACGTGACGAGGCAGACTGTGTCTTGATGAGATGTGACCATTCTATTTCTTTGGATCCCTTATCTAATGAGGAAGCTTTGACACTGCTACAAAAACTTTCTGGTGTTAACTCTCAATCTGCTCTATTTGAAGTGGCACAGGAAGTTGCTTCTAAATGCAATGGCTTACCTGGATTGATTGAAAAGGTGGCGACTTCCTTGAAAAATAAATCCTTGGAAAATTGGAAACAATCATTAGTCAGTCTAAGCCACACAACTGCCCGCTACCAGATTTTTATCAGTTTTAGAGGAGGCGATACTCGACATGTTTTTACAAACCACCTTCATTATGCTTTGTGCCAGAAGGGATTCGTGACCTTCAAAGATGATGAATCATTGGAGGGTGGGGTCCCAATTGAGAAACTTCTTGACGACATTGAAGAATCGAGATTTGCAATTGttattttatccaaaaattaTGCAGACTCTGAATGGTGTCTCAAAGAACTGGTCAAAATTCTTGAGTGTAAGGATAAGGAAAGTAAGAACCAACTAGTTTTGCCAATCTTCTATGAAGTACCGCCCACAGACGTAAGGCATGTACGAAATAGTTATGCTGATGCCATGGCCAAACATGTAAACAATGGAAAAGATTCATATAGAGTTCTAACATGGAAGAAGGCTTTATATGATATTTGTACCCTGACGGGATTTGAAAAGCCTCGTGACTGGACCAGAGATCAATTTATTGATAAGATTGTCAATTTTGCCTGCGATCACAGACATCGCTTGCATATACAAAGCATTTTGGCCGATCCTTCTGCCAATATCATATTTGAAGCTGTTGTTGATGATCGTTACACCAGAGAGATTCATGTGACTATCATTGCCACTGGCTTTTCACAGTCTTTTCAGAAGAAGCTACTAACAGATCCAAGGGCTGCAAAACTTCTTGACAAAGTGGCCGAGGGATAA 3345 0.4359 MAENAKRLIIGIDLGTTYSCVGVWHHGTVQIITNDHGNRTTPSYVAFTDSERFIGDAAKIQVTRNPVNTVFDVKRLIGRRFSDASVQSDMKLWPFKVIAGTSDKPMIVVNYMNEEKHFTAEEISSMVLNKMRQIAEAYLGSTVKDVVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAALAYGLDDMEPIVDDEKIVLIFDLGGGTFDVSLLTIEDSVFVVIATAGDSHLGGEDFDNRMVENFVEEFKRKHGKEISGNPRALRKLRTACERAKRILSSTVHTTIEIDSLYEGIDFYTTVTRNRFEELNMDLFSNCMDTVQRCLREAKMDKSSVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAALQAAILNHEQSEKVKDLTLVDVTPLSLGVETVGGVMTVLIRKNTTLPYREEQVFSTHSDNQPSVLIRVYEGERTRSRENNLLGKFELSGILPAPKGVPKINVCFQVDVNGIMTVSAEDKSTGNKNNITITNDKGRVYEGERTRSRENNLLGKFELSGILPAPKGVPKINVCFQVDVNGIMTVSAEDKSTGNKNNITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKNVEAKIALEQELERYCFTKGAPNLEPQVERDTCRDQIPLPSLSSSLQSFPSGNFGYYFNSTKKASQKIIEALKDDTYYVIGLHGKKGSGKTSLVKAETNEYEKIFHRVIFPTVSNNQDAKCIQEGIASSLNVHFERDDSDGMRVMKIITALEKKDRTILVILDNFPKKSQPQELGIPFNSRQCKVLLTTRDEADCVLMRCDHSISLDPLSNEEALTLLQKLSGVNSQSALFEVAQEVASKCNGLPGLIEKVATSLKNKSLENWKQSLVSLSHTTARYQIFISFRGGDTRHVFTNHLHYALCQKGFVTFKDDESLEGGVPIEKLLDDIEESRFAIVILSKNYADSEWCLKELVKILECKDKESKNQLVLPIFYEVPPTDVRHVRNSYADAMAKHVNNGKDSYRVLTWKKALYDICTLTGFEKPRDWTRDQFIDKIVNFACDHRHRLHIQSILADPSANIIFEAVVDDRYTREIHVTIIATGFSQSFQKKLLTDPRAAKLLDKVAEG 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03917 1114 Gene3D - 10 385 - -
Tsu05g03917 1114 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Tsu05g03917 1114 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 386 515 IPR029047 -
Tsu05g03917 1114 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 516 627 IPR029047 -
Tsu05g03917 1114 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 515 IPR029047 -
Tsu05g03917 1114 Coils Coil 587 614 - -
Tsu05g03917 1114 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Tsu05g03917 1114 Gene3D - 817 887 IPR042197 -
Tsu05g03917 1114 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu05g03917 1114 ProSiteProfiles TIR domain profile. 884 1047 IPR000157 GO:0007165
Tsu05g03917 1114 PANTHER HEAT SHOCK PROTEIN 70KDA 8 517 IPR013126 GO:0005524|GO:0140662
Tsu05g03917 1114 PANTHER HEAT SHOCK PROTEIN 70KDA 517 619 IPR013126 GO:0005524|GO:0140662
Tsu05g03917 1114 Gene3D - 888 1053 IPR035897 -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 370 390 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 338 354 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 397 416 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 478 494 - -
Tsu05g03917 1114 PRINTS 70kDa heat shock protein signature 210 220 - -
Tsu05g03917 1114 SUPERFAMILY Tubulin C-terminal domain-like 1060 1097 IPR008280 -
Tsu05g03917 1114 Pfam Hsp70 protein 516 622 IPR013126 GO:0005524|GO:0140662
Tsu05g03917 1114 Pfam Hsp70 protein 9 515 IPR013126 GO:0005524|GO:0140662
Tsu05g03917 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 879 IPR027417 -
Tsu05g03917 1114 Gene3D Actin; Chain A, domain 4 236 319 - -
Tsu05g03917 1114 SUPERFAMILY Actin-like ATPase domain 197 387 IPR043129 -
Tsu05g03917 1114 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Tsu05g03917 1114 Gene3D - 71 126 - -
Tsu05g03917 1114 Pfam NB-ARC domain 673 884 IPR002182 GO:0043531
Tsu05g03917 1114 Pfam TIR domain 886 1044 IPR000157 GO:0007165
Tsu05g03917 1114 SMART till_3 885 1025 IPR000157 GO:0007165
Tsu05g03917 1114 CDD HSPA1-2_6-8-like_NBD 10 388 - -
Tsu05g03917 1114 Gene3D - 658 813 IPR027417 -
Tsu05g03917 1114 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 8 517 - -
Tsu05g03917 1114 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 517 619 - -
Tsu05g03917 1114 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 516 618 IPR029047 -
Tsu05g03917 1114 SUPERFAMILY Toll/Interleukin receptor TIR domain 879 1027 IPR035897 -
Tsu05g03917 1114 Gene3D - 192 367 - -
Tsu05g03917 1114 Gene3D - 1054 1105 IPR037103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03917 Tsu-Chr5 50182212 50186089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03917 516 618 Calmodulin-binding Proteins AT3G12580 80.583 4.60e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03917 K03283 - jre:108986352 824.698