Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03916 ATGGCTTCTAATTCAGACCAATGGGTGAAGGAATATAATGAATCAATGAAACTTGCTGATGATATCAGCAACATGGTTTCTGAGTGGAGTTCAAATCCTGCATCTGGACTGGAAACCCAGCGGCAATCATCTTCTATAAGAAGGAAGATTACAATATTAGGGACTAGGCTTGATAGCTTGCaatcccttttatcaaagcTTCCTGCAAAGCCGCCTCTatCTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGCAAATTTGAGATCGAAAGTTAACGAAATGGCTTCTAAGCTGAACATGTCAAATTTTGCAAACAAGGATAGCTTGCTTGGTCCAGAAGTAAAACCAGATGTAATGAGTAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGATTTCAACGACAAATTATTAAAGAACAAGATGAGAGTCTCGAGAGTTTGGAGCAGACTGTAATCAGCACGAAACACATTGCATTGGCAGTGAATGAAGAGCTGGATCTACACACAAGACTCATTGATGATTTAGACCAACATGTAGACGTCACAGACTCTCGGCTTAGGCGGGTGCAAAAGAACTTGGCAGTATTAAATAAACGAACCAAAGGTAGTTGCTCTTGCTTCCACATGCTCTTATCAGTCATCGGTATCGTGTTTTTGGTTGTTATGATTTGGCTGTTGGTCAAATATTTGTAA 699 0.3991 MASNSDQWVKEYNESMKLADDISNMVSEWSSNPASGLETQRQSSSIRRKITILGTRLDSLQSLLSKLPAKPPLSEKEMNRRKDMLANLRSKVNEMASKLNMSNFANKDSLLGPEVKPDVMSRTVGLDNNGLVGFQRQIIKEQDESLESLEQTVISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGSCSCFHMLLSVIGIVFLVVMIWLLVKYL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03916 232 Pfam SNARE domain 173 223 IPR000727 -
Tsu05g03916 232 Gene3D - 138 200 - -
Tsu05g03916 232 PANTHER SYNTAXIN 1 225 IPR045242 -
Tsu05g03916 232 CDD SNARE_Qc 139 196 - -
Tsu05g03916 232 SUPERFAMILY SNARE fusion complex 134 197 - -
Tsu05g03916 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Tsu05g03916 232 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 225 - -
Tsu05g03916 232 SMART tSNARE_6 131 198 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03916 Tsu-Chr5 50175785 50178555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03916 1 232 SNARE and Associated Proteins AT1G16240 67.382 1.14e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03916 K08503 - gmx:100782666 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03916 05 50175785 50178555 Tsu05g03916 05 50175785 50178555 ECH
Tsu03g01176 03 11024585 11037205 Tsu05g03916 05 50175785 50178555 PCT