Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03914 ATgtcacataaatattttttcatttttttgtcccTCTTATTAATCTCAAGATTCTCAACAAGTGTTTGTGTTGAAGATAGTTTCATCTCTGTGATTATATCTGATAAGGGTCTTGACTTTGTCAAAGATATTCTAATAAACCAAACTATTGAATCTATAGTTCTTTCTCAGCTACCACAAATTGAGAAATCTGTTCAAGTTCCTCTTGTTGGAAAAGCTAATGTAATTCTTTCTGAGATTACAATCAAAGATATTCAAGTGAGTTCTTCATATGTTGAAACTGGTGAAACTggtattgttgttgttgtttctggTGCTACTGCTGATTTGAGCTTGAATTGGAGGTACACAGTTAGTAGTTGGTTAGTTCCAATTGGAATTTCAGATAGTGGAACTGCCACTGTTAAGGTTGAAGATATGCAAGTAGGGCTTGCCGTAAATTTAACGAACGAAGAAGGAACTCTTAAGCTGATTCTCTTAGATTATGAATGTGATGTTGGCGAATTATCTATAAAAGTGAACGGTGGAGCAGCTTGGCTTTATCAAGTGCTAGTTGATGCTTTTAAAGGAAATATAGGATCTGCAGTCGAAGATGCGGTTTCTAAGAAAATAAGTGAAGGGATACCAACGCTCGACGATTTACTGCAAACTCTTCCGAAGACAGTTTTATTAGATGAAACTGCTGTTCTAAATGTTTCTTTCGTTGGCAATCCTGTGCTGAGTAATTCTTCTATTGAACTTGGAATCAACGGTTTATTCACCGAGAGAAATGATGATTTAGTACCTCAAGTTTACTACAGAGGATATGATGACATTTCTGTTTCTAGTAGTGATTTACCAAAGATGATAAAGATTTCTATACATGAAAATGTTTTCAAATCGGCCTCTGAAGTTTACTTTGCAGCAGATGCTTTGCAATGGATACTCGATGAACTACCTGATCAGGCCTTTTTGAACACTGCTGACTGGAAAATCATCATTCCTCAATTATACAAGCAATATCCAAATGATGAGATGAATCTTAATATCTCGGTATCTTCTCCACCGATTATAGAAGTATCGGATCAAGATATCGGTGCTACCATTTCCATAGATTTAATCATCGATGTTCTGGAAGATGATGAAGTCATACCTGTTGCATGCATCTCTGTGGATATAAGTGCTACGTTTGACGCAGAAATTGTACGAAACAGTCTTACAGGTCGGCTTAAATTGAAGAAGTTCTCCACATACTTGAAATGGAGCAAAATAGGGAAACTTCACATGAATGTAATTCAGTCAATGTCATCAACTGTCCTCAAAACCATCATCATACCGTACCTAAACACGCAGTTAAAGAGAGGAATTCCATTGCCTATTCTCAACGGTTTTGCCCTTAAGAATGCGCGTATCTTGTACACTCCTCCATGGATTGCAGTATCTAGTGATGTTACCTTCTTAGGAGACTACTATCTTAGACATCATCTAGCTTATGGTGAAAAAAGGACCATAGATTGTGGTGGGAAGCAAGTTGTGCATACCATCAATGTTGACCAACACAGAAAAGGAGCATTCAAAACAATTCAAGCTGCCATTGATTCTATAAAGACCCCAAATCATCGATGGGTTATGATTAATATAAATCCTGGCATAtacaaGGAAAAAGTTCTGATACCCGCTAGAAAGTCATGCATTATTTTAAAAGGCTCAGGTAGCAATAACACAATCATTACTGATGACAAATCATTTCATGATGGTGGCCAATCCGCGAGTGCTACATTTCAATCATCTCCGCCTAATGTAATTTTGAGTGGTATTAAATTCCAGAACACATTTGGATTTAATGGACCAGCAGTAGCAGCTTCTATATATGGTGATAAGACTGCAATTTTTGAATGTAGTTTCATTGGATATCAAGATACTTTACTTTCATCAACGGGGCgccaatattttaaaaattgttatattcAAGGTGAAGTTGACTTCATTTGTGGTGCTGGTCAATCGTATTTTGAGAATTGTGTGATGCATGCCACTCAAGGAAAATCTAGACCTTCAGGTTTTGTAACAGCACAACATAGGGAAAAACCAAATGACCCAGATGGATATGTTTTTAGAGGAGGGTCAATTGTTGGGAATGGCAAGGTGAATCTTGGAAGACCTTGGGGACCTTATGCAAGAGTTATATTTTGGGGAACATATTTTTCATCAGTGGTAACTCCTCAAGGATGGAATGCTTGGAATAATTCAAATATAAGCCAattGCAAGAGAGTACATTTGCAGAAGTTAATTGTACAGGACCAGGGGCCAATACTAAGGAACGTGTCAAGTGGGAGAAGGAACCAAAAGACTTAAACTTAAATGAATTTACTTTGTCATCTTTCATAAATAATGATGGATGGCTTGACAATATACCatctatataa 2406 0.3579 MSHKYFFIFLSLLLISRFSTSVCVEDSFISVIISDKGLDFVKDILINQTIESIVLSQLPQIEKSVQVPLVGKANVILSEITIKDIQVSSSYVETGETGIVVVVSGATADLSLNWRYTVSSWLVPIGISDSGTATVKVEDMQVGLAVNLTNEEGTLKLILLDYECDVGELSIKVNGGAAWLYQVLVDAFKGNIGSAVEDAVSKKISEGIPTLDDLLQTLPKTVLLDETAVLNVSFVGNPVLSNSSIELGINGLFTERNDDLVPQVYYRGYDDISVSSSDLPKMIKISIHENVFKSASEVYFAADALQWILDELPDQAFLNTADWKIIIPQLYKQYPNDEMNLNISVSSPPIIEVSDQDIGATISIDLIIDVLEDDEVIPVACISVDISATFDAEIVRNSLTGRLKLKKFSTYLKWSKIGKLHMNVIQSMSSTVLKTIIIPYLNTQLKRGIPLPILNGFALKNARILYTPPWIAVSSDVTFLGDYYLRHHLAYGEKRTIDCGGKQVVHTINVDQHRKGAFKTIQAAIDSIKTPNHRWVMININPGIYKEKVLIPARKSCIILKGSGSNNTIITDDKSFHDGGQSASATFQSSPPNVILSGIKFQNTFGFNGPAVAASIYGDKTAIFECSFIGYQDTLLSSTGRQYFKNCYIQGEVDFICGAGQSYFENCVMHATQGKSRPSGFVTAQHREKPNDPDGYVFRGGSIVGNGKVNLGRPWGPYARVIFWGTYFSSVVTPQGWNAWNNSNISQLQESTFAEVNCTGPGANTKERVKWEKEPKDLNLNEFTLSSFINNDGWLDNIPSI 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03914 801 Gene3D - 501 800 IPR012334 -
Tsu05g03914 801 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 30 242 IPR017943 GO:0008289
Tsu05g03914 801 Gene3D - 30 464 - -
Tsu05g03914 801 Pfam LBP / BPI / CETP family, N-terminal domain 37 208 IPR017942 GO:0008289
Tsu05g03914 801 Pfam LBP / BPI / CETP family, C-terminal domain 280 477 IPR001124 GO:0008289
Tsu05g03914 801 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 3 491 - -
Tsu05g03914 801 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 243 478 IPR017943 GO:0008289
Tsu05g03914 801 SMART bpi1_3 33 258 IPR017942 GO:0008289
Tsu05g03914 801 PANTHER OS06G0309200 PROTEIN 3 491 IPR045897 -
Tsu05g03914 801 Gene3D - 36 216 - -
Tsu05g03914 801 SUPERFAMILY Pectin lyase-like 507 797 IPR011050 -
Tsu05g03914 801 SMART bpi2_2 277 475 IPR001124 GO:0008289
Tsu05g03914 801 Pfam Pectinesterase 509 791 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03914 Tsu-Chr5 50156663 50165906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03914 485 741 Carbohydrate Esterase AT2G19150 43.071 3.23e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03914 K05399 - gmx:100804747 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03914 05 50156663 50165906 Tsu05g03914 05 50156663 50165906 ECH
Tsu03g01177 03 11037451 11042413 Tsu05g03914 05 50156663 50165906 PCT