Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03913 ATGGAACCAACGACGGATCCGCCACCGGAGATCGAGAACGGAGTACGAGAGGAACAAGAGGAACAACAACGGTGTAACAAGAAACCGAAGATTGATGAAATTGAGAATTCGGAATCGGTGGAATTGAAACGAGTGGCGGagattgttttggttttatcaACGATGGCGACGATGCGTGGTGGAAAGAAACCTAGTGATGTTGAAGTTGAGCTTATGAGAGAGGCGAGGAATAAGCTTGCGATTCTATGTCAAGGAATTGCTCCGAAGGATATTGTTGCTGGTGAAGCTATTGGTTCTGTAATTCAGGATCTTGGTTTGAATGTTAAGGTTGAGGATCAGAGATTAGGGTTTCGGACTACGCCGAAGATGTCTATTGCTGAACGGTATTCATTCGCGAAAACAAAGATGGAGGAATCAAAGAAATTCTCTGCACCTTCTACAACATATACATCTCAGCCCTTGCAAACAAACACCAGTGGAATGGTTGACAATCGTGTGCCAACAAATGCTGTTCGAATGTTTGCGCCTGATAAATCAAACCACACGGCAATATCATCTACAGTTTCCATGGCGTCTATTCCTCCTCATCTTTCTACAGGATCTTCTGCAGCATTGCAATATCAATCAACCAGCAATGAAGTGAGACCGTCAATTGTTTCTGGTGTAATGTCTAACAATCACATGGGAAGAAATCCATCGTCGGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGATTGAGTGGAGCTCCTTATGTGCTTCAGGTCCAAGCAAATTCAATGGCAAACCAATCATTGGTGAATGCTCCTACATGGTCAATACAGACACAACCTGTGTCATTAGCTAGAAATGTATCAGAAAACAAGGTGCTGCCTGCTCATAACTCTGTCAAGGTTGAAGGAACTGTTGGTGCAACCGTATCAAGGGCAGGTCCACAAGTAACAACAGCTCAGAGCGTTAGACCATTTATTACTCAAACGGGACCTGGAAACATGTCTAGCATGCACCAGCCGTTGCAGGGTGGGAACATGGTTCAACCTCCTATTATTCCTAGTCACTCTGATATTGCAAAGGTTGTCCAGAAATTGTTACTGCCGAAGGTTCCTGATCGTCCCACTTGGACTCCTCCGTCAAGGGATTATATGAGTAAGACTTTCACGTGTCAGACGTGTGAGCTCACTGTCAGCGAGGTTGATTCTGTTCTTATGTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCAGCGGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGAGATCCTCAATTACATCACCAAGTTTTCCCTCTACTACAGTTGGTATTCAACCATCTTCAGAGAAAAAAGCAGAGAACTTAGATTCAAAGGTCAGCCCACAGATGTTTACAACAAATGGAAACTCTGTTCCAACTGTTTCCAGTGCCAATCACAATACTGAGCTGTCATTTGACTCAAATACCCCAGATACAAGAGATATACAAGGTTCTAACATTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCAAACATATGTATGAAATCTGCTGCTTGTAGTGCTTCCACTGGCTTGCAGGGTGAAAGTTATACTGAACAAATAGATTCAAAGGCTTTGACCTGTAAAGATACTTCAGAACCTGAAACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAACCATCACAAGATTCTCAAGTTGAGATGACAGTGTCGCACAACAATGCTGAAATATCATCAGATAGACATGTTAGCAGTAGTTTGACGATTAGTAATTCAAAAGAATCTCATGGAGGAGAAAATATAACTTCTGATATCAACCACAATGACCTAGATGTTGCACAACCAAATTCTGTCGGAGGTTCTGGAACTAATACCGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCCGTAGAATGGATTGGTGATGTTGTACAACTTGTAGATGAGAAAAAGTATTACCAATCTTGCTGCATTGATGGTGTAACATATAGGCTGCAGGGTCATGCTTTTTTCACATCCAACCACGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATTCCAAAACTGGGGTGAAGTGGGTTAAGGCGACAAAGTGCTACTTCCCTGATGATTTGCCGGGGAATATCGGTCATCCTTGTATATCTGAAGTCAATGAgGTTTATGAATCTAATAGTGATAGAATAGAAATGGCTAGCTCTATCCGAGGCCCTTGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGACAGAAGATGTCAATTTGGAATTGAGGCAAGTGCTAGTGTGCAGCCTATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA 2487 0.4178 MEPTTDPPPEIENGVREEQEEQQRCNKKPKIDEIENSESVELKRVAEIVLVLSTMATMRGGKKPSDVEVELMREARNKLAILCQGIAPKDIVAGEAIGSVIQDLGLNVKVEDQRLGFRTTPKMSIAERYSFAKTKMEESKKFSAPSTTYTSQPLQTNTSGMVDNRVPTNAVRMFAPDKSNHTAISSTVSMASIPPHLSTGSSAALQYQSTSNEVRPSIVSGVMSNNHMGRNPSSVALPRVENPQFKVTGGLSGAPYVLQVQANSMANQSLVNAPTWSIQTQPVSLARNVSENKVLPAHNSVKVEGTVGATVSRAGPQVTTAQSVRPFITQTGPGNMSSMHQPLQGGNMVQPPIIPSHSDIAKVVQKLLLPKVPDRPTWTPPSRDYMSKTFTCQTCELTVSEVDSVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSITSPSFPSTTVGIQPSSEKKAENLDSKVSPQMFTTNGNSVPTVSSANHNTELSFDSNTPDTRDIQGSNISSSIETIDEKPDPNICMKSAACSASTGLQGESYTEQIDSKALTCKDTSEPETLPKLSEPAKCENLQPSQDSQVEMTVSHNNAEISSDRHVSSSLTISNSKESHGGENITSDINHNDLDVAQPNSVGGSGTNTEGIQHSALSSDSSHAVEWIGDVVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSNHGKLTPSKLQSMWEDSKTGVKWVKATKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRCQFGIEASASVQPIFLCRWFYDEIKKSFQPVIS 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03913 828 MobiDBLite consensus disorder prediction 459 478 - -
Tsu05g03913 828 CDD PHD_SF 391 439 - -
Tsu05g03913 828 MobiDBLite consensus disorder prediction 143 163 - -
Tsu05g03913 828 Gene3D - 679 827 IPR043151 -
Tsu05g03913 828 MobiDBLite consensus disorder prediction 1 30 - -
Tsu05g03913 828 CDD BAH 699 826 - -
Tsu05g03913 828 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 827 - -
Tsu05g03913 828 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 827 - -
Tsu05g03913 828 MobiDBLite consensus disorder prediction 574 670 - -
Tsu05g03913 828 MobiDBLite consensus disorder prediction 459 526 - -
Tsu05g03913 828 Pfam PHD-finger 392 440 IPR019787 -
Tsu05g03913 828 MobiDBLite consensus disorder prediction 11 30 - -
Tsu05g03913 828 SMART PHD_3 391 440 IPR001965 -
Tsu05g03913 828 ProSiteProfiles BAH domain profile. 700 827 IPR001025 GO:0003682
Tsu05g03913 828 MobiDBLite consensus disorder prediction 590 670 - -
Tsu05g03913 828 ProSiteProfiles Zinc finger PHD-type profile. 389 442 IPR019787 -
Tsu05g03913 828 SUPERFAMILY FYVE/PHD zinc finger 383 447 IPR011011 -
Tsu05g03913 828 ProSitePatterns Zinc finger PHD-type signature. 392 439 IPR019786 -
Tsu05g03913 828 MobiDBLite consensus disorder prediction 486 526 - -
Tsu05g03913 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 440 IPR013083 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu05g03913 PHD 5.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03913 - - gmx:100807139 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03913 05 50145840 50153413 Tsu05g03913 05 50145840 50153413 ECH