Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03896 ATGGCTTCCACTTACCGTGACCGTACGTCGGAGTTCCGATCACTGACGGAGACTCTAAAGAAGATCGGCGGCGGAGGAGGTGGAGCCACATCACCGCCTAATCAGCAACCATCCACCTCTCAAAATTCCTATTCAAGATCCGATTTTAACCGAAAGGCATCACAAATCGGATTAGGAATTCACGAAACCTCACAAAAAATCTCAAGACTCGCTAAGTTGGCGAAGAAATCATCGATGTTTAATGATCCAATTATGGAAATTCAAGAACTAACTGCATTGATTAAGACTGATATAACGACGTTGAATTCGGCtgttttggatttgcaaaatatTCAGAAAATTGATTTGGCTGATGAGAATTACTCAGAAGATAGGGTTGTACATTCCAATGCTGTTTGTGATGACTTGAAGAACAAGCTCATGGGAGCTACAAAGCATCTTCAGGATGTTTTGACTACCAGGACAGAGAATATCAAGGCTCATGAGAATAGGAGGCAGATATTTTCTAAGAATCCTTTACAGCATCAGCCGAAGCCAACTACTGAGCCGCCACCTTGGTCTAATTCAACAAATGCATTTGAAACTGAGAGTTTGCAACAAACATCAGGATTACCATCAAATGGAATTCCAGTTGGCAATCAGCTAAGACGAAGATTAGCTGTGGATAACACTCCATCCCAGCAAATGGAGATGTCTTTGGTACAACAGGTTGTTCCTCGGCACGAAGAATATGCTCAAAATCGGGCATCTGCTCTGCACAATGTGGAATCTACTATTACCGAACTTAGTGGAATCTTCACACATTTGGCTACAATGGTTGCCCATCAAGGAGAGCTAGCTATCAgGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGACGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATAGGTGGcttatgataaaaatatttgccattttgatattttttctgATGATCTTCATATTCTTTGTGGCCTAA 1005 0.397 MASTYRDRTSEFRSLTETLKKIGGGGGGATSPPNQQPSTSQNSYSRSDFNRKASQIGLGIHETSQKISRLAKLAKKSSMFNDPIMEIQELTALIKTDITTLNSAVLDLQNIQKIDLADENYSEDRVVHSNAVCDDLKNKLMGATKHLQDVLTTRTENIKAHENRRQIFSKNPLQHQPKPTTEPPPWSNSTNAFETESLQQTSGLPSNGIPVGNQLRRRLAVDNTPSQQMEMSLVQQVVPRHEEYAQNRASALHNVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGAHSSLLRHLNQISSNRWLMIKIFAILIFFLMIFIFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03896 334 MobiDBLite consensus disorder prediction 162 211 - -
Tsu05g03896 334 SMART tSNARE_6 237 304 IPR000727 -
Tsu05g03896 334 MobiDBLite consensus disorder prediction 1 47 - -
Tsu05g03896 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu05g03896 334 PANTHER SYNTAXIN-31 4 333 - -
Tsu05g03896 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Tsu05g03896 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Tsu05g03896 334 MobiDBLite consensus disorder prediction 29 47 - -
Tsu05g03896 334 Gene3D - 41 297 - -
Tsu05g03896 334 SUPERFAMILY t-snare proteins 45 297 IPR010989 GO:0016020|GO:0016192
Tsu05g03896 334 MobiDBLite consensus disorder prediction 185 209 - -
Tsu05g03896 334 Pfam SNARE domain 279 330 IPR000727 -
Tsu05g03896 334 PANTHER SYNTAXIN 4 333 IPR045242 -
Tsu05g03896 334 CDD SNARE_syntaxin5 245 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03896 Tsu-Chr5 49971678 49976781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03896 1 334 SNARE and Associated Proteins AT5G05760 60.290 2.09e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03896 K08490 - gmx:100777383 477.248