Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03888 ATGGGTTATAAAGGTGGTGGACTTGGGAAGAATGAGCAGGGTATTGTGAATCCTATTGAGGCAAAATTAAGGGCTAAGAAACTTGGTCTTGGAATTAATGAATCGAAGACGACTACAATGTCGTTGCCTGCTTTGCAGACGGAAAAAAAGGATGCACCGGTAGGAGATGTGCAGCAGCCTACACTTGGAAGATCGAGGGAACGTTCGTGGTTaaagaagttgaagaagaagaagaaaaaagaagagtatGTAACTGCTGAAGAGTTGTTGGCGAGCAAGCAAGAGGAGGATTCAGAGGTTGTTATGAAGATTTATGATATGCGGGGACCGCAGATACGAGTGTATACAAATTTTTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAGAGGATGTCCCAATGCCTGAGCTTCAGAATATCGTAGCACGAATAGTTTGGTTTGCTGAGGCTGACATCCATGAGATTGACAGAGATTTGAGGAATGAGAGGGATACAGCACTTAgcttgaaaaaagaaaaagagaactTGGAAGCTGAGGCATCATTTCAAAAGAATCAGCTGGATAATTATCAGAAAATAATGAATGTGTCGGACCGAGTTGGAGAAGAGAACCCGTTATTAACATTAACATTGGACTCCCTTGCTCAATGCTTTAGAGACATGCACAAAAGATATCCCGAGGACTATAAGTTGTGTAACTTGTCGTGCATTGCTTGTTCATATGCTCTACCTTTGTTTGTCAGAGTGTTCCAAGGTTGGGATCCTCTTTGA 771 0.3956 MGYKGGGLGKNEQGIVNPIEAKLRAKKLGLGINESKTTTMSLPALQTEKKDAPVGDVQQPTLGRSRERSWLKKLKKKKKKEEYVTAEELLASKQEEDSEVVMKIYDMRGPQIRVYTNFSDLNAEEKAKEEDVPMPELQNIVARIVWFAEADIHEIDRDLRNERDTALSLKKEKENLEAEASFQKNQLDNYQKIMNVSDRVGEENPLLTLTLDSLAQCFRDMHKRYPEDYKLCNLSCIACSYALPLFVRVFQGWDPL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03888 256 SMART G-patch_5 1 33 IPR000467 GO:0003676
Tsu05g03888 256 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 256 IPR045211 GO:0000390
Tsu05g03888 256 Coils Coil 76 96 - -
Tsu05g03888 256 PANTHER TUFTELIN-INTERACTING PROTEIN 11 1 256 - -
Tsu05g03888 256 Coils Coil 159 193 - -
Tsu05g03888 256 MobiDBLite consensus disorder prediction 39 66 - -
Tsu05g03888 256 Pfam G-patch domain 1 32 IPR000467 GO:0003676
Tsu05g03888 256 ProSiteProfiles G-patch domain profile. 1 35 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03888 Tsu-Chr5 49915348 49916118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03888 1 34 C2H2 Transcription Factor Family AT5G26610 58.824 6.05e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03888 K13103 - gmx:100781621 354.369