Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03880 ATGGCAGAAAAAGATTTTACATCAAAACTTTTAGGGTTTGTTGGCAAGGAGTGTGTGGTCCTTGAGTCCTTGCTACTTTTGAATGATCCATTCTATGGTTCTCTTCATTCAAACAACAATGTTCCTATTCCTGTTTCTGAATGCAACGTCCAAGCTTCTAGGGCAATCGTCCCAATGAAGAAATTAAGAAGTGGTCGATCAAAGAGAAGAGATTGCAACATTCTATCTTCAAAGTTCAAGGTTACTTCTTGTACAAGCAACAATGAAGATGTTGGAAACATAACAGTCACGGAAAAAACAAGTGAAGGGATCAAGActatcaagaaaagaaaagtaatgGGTGAGGGACCAAGAAATTTGTCGAAGAAAttcaagaaagagaaagaagaggtGCAAGAAGAGCAACCCGATCTTCCATTGGCGTTTAGAGAGAAAATTGAACAAATGGAAGGTAATGATGTGAAGTTGGTGATCCAGAAGAGATTGACTATGACTGACGTGACACGAAACAACGGTCGACTATCCATTCCAATTGGTAAGAAGATTGAAAAGAGTAGTCTTTTGACACAAGAGGAGGGAATGTATTTGGATTATGTGCCTCAAAAGAAAGGGACGCGAAAGCTTGATGGTATGTCTGTATCTATGTTGGATACTAATCTTAAACTTTGGGATGACATGTGCTTCAAGAAGTGGAAAATGGGGAAATCCGAGGTCTACAATATCACAGGTGGATGGTTCAAACTTGTAGTAGAAAACCATTTGGAACCAGATCAAAAGATACaactttggtcttttaaaaGAGACAATCATCTCAATTTCGCACTCGTCAAACTTTAG 837 0.3632 MAEKDFTSKLLGFVGKECVVLESLLLLNDPFYGSLHSNNNVPIPVSECNVQASRAIVPMKKLRSGRSKRRDCNILSSKFKVTSCTSNNEDVGNITVTEKTSEGIKTIKKRKVMGEGPRNLSKKFKKEKEEVQEEQPDLPLAFREKIEQMEGNDVKLVIQKRLTMTDVTRNNGRLSIPIGKKIEKSSLLTQEEGMYLDYVPQKKGTRKLDGMSVSMLDTNLKLWDDMCFKKWKMGKSEVYNITGGWFKLVVENHLEPDQKIQLWSFKRDNHLNFALVKL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03880 278 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 70 278 - -
Tsu05g03880 278 SUPERFAMILY DNA-binding pseudobarrel domain 157 274 IPR015300 -
Tsu05g03880 278 Pfam B3 domain-containing protein At2g31720-like 144 249 IPR005508 GO:0003677
Tsu05g03880 278 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 70 278 IPR005508 GO:0003677
Tsu05g03880 278 Gene3D - 147 275 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03880 Tsu-Chr5 49840287 49841123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03880 142 275 B3 DNA Binding Superfamily AT1G05930 25.926 1.92e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03880 - - mtr:MTR_5g092880 181.03