Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03878 ATGAAGAAATTAAGAAGTGGTCGATCAAAGAGAAGAGATTGCAACATTCTATCTTCAAAGTTCAAGGTTACTTCTTGTACAAGCAACAATGAAGATGCTGGAAACATAACAGTCAGGGAAAAACCAAGTGAAGCGATCAAGAatatcaagaaaagaaaagtaatgGGTGAGGGACCAagaaatttgttgaaaaaatgcAAGAAGGAGAAAGAAGAGGTGCAAGAAGAGCAGCCCGATCTTCCATTTGCGTTTAGAGAGAAAATTGAACAAATGGAAGGTAATGATGTGAAGTTGGTGATCCAGAAGAGATTGACTATGACTGACGTGACACGAAACAACGGTCGATTATCCGTTCCAATAGGTAAGAAGATCGAAAAGAGTAGTCTTTTGACACAAGAGGAGGGAATGTATTTGGATTATGTGCCTCAAAAGAAAGGAACGCGAAAGCTTGATGGAATGTCTGTATCTATATTGGATACTAATCTTAAACTTTGGGATGATATGTGCTTCAAGAAGTGGAAAATGGGGAAATCCGAGGTCTACAATATCACGGGTGGATGGTTCAAACTTGTAGTAGAAAACCATTTGGTACATGATCAAAAGGTTCAGCTTTGGTCTTTTAAAAGAGACAATCATCTCAATTTCGCACTTGTCAAACTTTAG 663 0.365 MKKLRSGRSKRRDCNILSSKFKVTSCTSNNEDAGNITVREKPSEAIKNIKKRKVMGEGPRNLLKKCKKEKEEVQEEQPDLPFAFREKIEQMEGNDVKLVIQKRLTMTDVTRNNGRLSVPIGKKIEKSSLLTQEEGMYLDYVPQKKGTRKLDGMSVSILDTNLKLWDDMCFKKWKMGKSEVYNITGGWFKLVVENHLVHDQKVQLWSFKRDNHLNFALVKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03878 220 Pfam B3 domain-containing protein At2g31720-like 86 191 IPR005508 GO:0003677
Tsu05g03878 220 Gene3D - 89 217 IPR015300 -
Tsu05g03878 220 SUPERFAMILY DNA-binding pseudobarrel domain 99 216 IPR015300 -
Tsu05g03878 220 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 15 220 IPR005508 GO:0003677
Tsu05g03878 220 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 15 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03878 Tsu-Chr5 49829826 49830899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03878 84 217 B3 DNA Binding Superfamily AT1G05930 25.185 6.83e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03878 - - mtr:MTR_5g092880 177.948