Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03871 ATGATTTATGGTAGATGTGCAGCTTGCAAGAGCCAAAGAAGAAGGTGTCCTTCTGATTGCATTTTCTCTCCTTACTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGCAGCAATGTTGGAAAAATGCTTCAGCAATTGCCTGAATATGTACGAGATCAAGCTGTAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTGTCTCTAAATTGTATCAACAAATCCATGATGCAGAAGTTGAGCTAGCCAAGATCCAAACTCAAATTGCATGTcttcaaaatcaacaatttGAAGTTGAATCAAATTTCAATGTCTTGTCCACAATTGAGGCTGAatcaaacttgaactttttgCAATCACAAAGTAATAGCATGGAGCAGTTTCAGTGGCCTAATCATGTTCCTAATTTGTTCAATTAA 468 0.3462 MIYGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLQQLPEYVRDQAVNTLYLEAQCRIQDPVYGCVGIVSKLYQQIHDAEVELAKIQTQIACLQNQQFEVESNFNVLSTIEAESNLNFLQSQSNSMEQFQWPNHVPNLFN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03871 155 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Tsu05g03871 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
Tsu05g03871 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 116 - -
Tsu05g03871 155 Coils Coil 84 111 - -
Tsu05g03871 155 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03871 Tsu-Chr5 49746554 49747515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03871 5 111 AS2 family AT3G26660 62.617 3.81e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu05g03871 LOB 7.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03871 - - lang:109328513 224.557