Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03867 ATGAAGAACTCTACAATACGAGAAGATGCATTGGAGTATCTTGAGGAAGTAGAAGCTGAACTTCAACATGATAGGATCAAGTTATATGTGTTTAAAAAAGTTCTAAGAGATTACaagtttgaaaaaattgatatagAAGGTATCAAAGTAAGAATGAAGGGATTGTTAAAAGAGCATTCAAATTTAATCTCAGGATTCAATGCCTTCTTGCCCAAGGAACATCATATCTCACCTAATTTCGAGGATGAAGATGCATTGGCATTTAATAATGCAGTAAAAGACGTGTTCCAAGATAAGAGAGAAAATTACGAGatgtatttaaatattatttttgatttGTCGTACAAAGGAGTTGATATAAAAAGTATCGTGGCAAGAATGAAGGAGCTGCTTAAAGATCATATAGAtttatattttggatttgaGGTTTTCCTGTCACCAACTGAATATTCCGCGACAACTGATAATCAATCCAAAGGTGATGATTCTaagaataaaatcatgaaaCGAGAAGCGGAGAATGAAAGATCAAACAAACCATCGAAGAAACTCAAGATCAACAATAACAATGATAATGCTAATGACCAACTACAAGAAGAGCGACCCGGCCTTCCATTGgcatttaaagaaaatattgaacAGATGGAAGGTAGTGATGTGATGTTGGTGACACAAAATGAATTGACCAAGAGTGACGTGACAGAAAACAATGGTCGCTTGTCCATCCCAGAAAAACAAGTAATTAACGAGAATTTTCTAgaaccaaatacatcacatAGAGTTGAGTTTGAAATTCTTGATAAGGTTAGTAGTGATGCTGATGAAACTTCTTCATCCGGAGCGGGTTCTAAGAAGAAGATCATGAAAAGGGAAGCAAAGAATGAAAGATCAAACAAACCATTGAAGAAACacaagatcaacaacaacaataatgaTAATGACCAGCTACGAGAAGAGCGTCCTGGGCTTCCGTTGGTGTTTAAAGAAAAGATTGAACAGATGGAAGGTAGTGATGTGATGTTGGTGATGCAAAAGAAACTGACCAAGACTGATGTGACAGCAAACAACAACCGGTTGTCCATCCCACAAAATGAATGTATTACCGAGAACTTTCTAGAATCTGAGGAGAAATCGTCCTTGGATTATGTGCGAGGGAAACACGATAAGTGTCATACTATTGTTACACTCTACGATGGTATGTGCTTCAAGAAATGGAGAATGGTGAAATCTGAAACCTATAATATCACAGGATTCAATGCCTTCTTGCCCAAGGAACATCAAATCTCACCTAATTTCGAGGATGAAGATGCATTGGCATTTAATAATGCAGTAAAAGACGTGTTTCAAGATAAGGGAGAAAATTACAAGAAGTATTTAACTATTATTTTCGATTTGACGTACAAAGGAGTTGATATAAAAAGTATCGTAGCAAGAATGAAGGAGTTGCTTAAAGATCATATAGAtttatattttggatttgaaATTTTCCTGTCACCAACTGGTAATCAATTCAAAGGTGATGATTCTaagaataaaatcatgaaaagaGAAGCGGAAAATGAAAGATTAAACAAACAATCGAGGAAACTCAGgatcaacaacaataataatgataatgaccAACTACAAGAAGAGCGACCTGAGCTTTCATTGGCGTTTAAAGAAAAGATCGAACAGATGAAAAGTAGTGATGTGATGTTGGTGATACAAAAGGAACTGACCAAGAATGACGTGGTAGAAAACAATAGTTGCTTGTCCATCCCAAAAAAACAAGTAATTAACGAGAATTTTCtagaaccaaatacatcaaatagAGTTGAGTTTGAAATTCTTGATAAGGTTAGTAGTGATGGTGATGAAACTTCTTCATCCGGAGAGGGTTCTAAGCAGAAGATCATGAAAAGAGAAGCGAAGAATGAAAGATCAAACAAACCATTGAAGAAACgcaagatcaacaacaacaataatgaTAATGACCAGCTACAAGAAGAGCGTCCTGGGCTTCCATTGGTGTTTAAAGAAAAGATTGAACAAATGGAAGGTAGTGATGTGATGTTGGTGATGCAAAAGGAACTGGCCAAGTGTGACGTGACAGCAAACAACGGCCGGTTGTCCATCCCACAAAATGAATGTATTACCGAGAACTTTCTAGTACCAGAGGAGAAATTGTCCTTGGATTATGTGCGAGGGAAACACGATAAGTGTCATACTATGTCTGTGTCTGTGTTGGATCCTAGTGTTACACTCTACGATGGCATGTGCTTCAAGAAATGGAAAATGGTGAAGTCTGAAATCTACAATATCACCGGTAAATGGAACAAACTCGTAGTAGAAAACCAATTGGAAAAACGCCAAAAGGTACAACTCTGGTCTTTTAGAAGTCATCAACAGCTCTGCTTTGCACTCGTCAAGCTCTAG 2418 0.3412 MKNSTIREDALEYLEEVEAELQHDRIKLYVFKKVLRDYKFEKIDIEGIKVRMKGLLKEHSNLISGFNAFLPKEHHISPNFEDEDALAFNNAVKDVFQDKRENYEMYLNIIFDLSYKGVDIKSIVARMKELLKDHIDLYFGFEVFLSPTEYSATTDNQSKGDDSKNKIMKREAENERSNKPSKKLKINNNNDNANDQLQEERPGLPLAFKENIEQMEGSDVMLVTQNELTKSDVTENNGRLSIPEKQVINENFLEPNTSHRVEFEILDKVSSDADETSSSGAGSKKKIMKREAKNERSNKPLKKHKINNNNNDNDQLREERPGLPLVFKEKIEQMEGSDVMLVMQKKLTKTDVTANNNRLSIPQNECITENFLESEEKSSLDYVRGKHDKCHTIVTLYDGMCFKKWRMVKSETYNITGFNAFLPKEHQISPNFEDEDALAFNNAVKDVFQDKGENYKKYLTIIFDLTYKGVDIKSIVARMKELLKDHIDLYFGFEIFLSPTGNQFKGDDSKNKIMKREAENERLNKQSRKLRINNNNNDNDQLQEERPELSLAFKEKIEQMKSSDVMLVIQKELTKNDVVENNSCLSIPKKQVINENFLEPNTSNRVEFEILDKVSSDGDETSSSGEGSKQKIMKREAKNERSNKPLKKRKINNNNNDNDQLQEERPGLPLVFKEKIEQMEGSDVMLVMQKELAKCDVTANNGRLSIPQNECITENFLVPEEKLSLDYVRGKHDKCHTMSVSVLDPSVTLYDGMCFKKWKMVKSEIYNITGKWNKLVVENQLEKRQKVQLWSFRSHQQLCFALVKL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03867 805 SUPERFAMILY DNA-binding pseudobarrel domain 687 803 IPR015300 -
Tsu05g03867 805 SUPERFAMILY PAH2 domain 428 499 IPR036600 GO:0006355
Tsu05g03867 805 MobiDBLite consensus disorder prediction 159 182 - -
Tsu05g03867 805 MobiDBLite consensus disorder prediction 151 201 - -
Tsu05g03867 805 Pfam B3 domain-containing protein At2g31720-like 557 618 IPR005508 GO:0003677
Tsu05g03867 805 Pfam B3 domain-containing protein At2g31720-like 330 410 IPR005508 GO:0003677
Tsu05g03867 805 Pfam B3 domain-containing protein At2g31720-like 675 776 IPR005508 GO:0003677
Tsu05g03867 805 Pfam B3 domain-containing protein At2g31720-like 212 271 IPR005508 GO:0003677
Tsu05g03867 805 MobiDBLite consensus disorder prediction 183 197 - -
Tsu05g03867 805 MobiDBLite consensus disorder prediction 615 667 - -
Tsu05g03867 805 Coils Coil 513 545 - -
Tsu05g03867 805 ProSiteProfiles PAH domain profile. 76 148 IPR003822 GO:0006355
Tsu05g03867 805 SUPERFAMILY PAH2 domain 77 147 IPR036600 GO:0006355
Tsu05g03867 805 MobiDBLite consensus disorder prediction 270 320 - -
Tsu05g03867 805 MobiDBLite consensus disorder prediction 284 320 - -
Tsu05g03867 805 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 158 258 IPR005508 GO:0003677
Tsu05g03867 805 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 281 419 IPR005508 GO:0003677
Tsu05g03867 805 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 506 603 IPR005508 GO:0003677
Tsu05g03867 805 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 626 805 IPR005508 GO:0003677
Tsu05g03867 805 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Tsu05g03867 805 Gene3D Paired amphipathic helix 437 497 IPR036600 GO:0006355
Tsu05g03867 805 Gene3D Paired amphipathic helix 84 145 IPR036600 GO:0006355
Tsu05g03867 805 ProSiteProfiles PAH domain profile. 2 73 IPR003822 GO:0006355
Tsu05g03867 805 ProSiteProfiles PAH domain profile. 428 500 IPR003822 GO:0006355
Tsu05g03867 805 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 506 603 - -
Tsu05g03867 805 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 158 258 - -
Tsu05g03867 805 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 626 805 - -
Tsu05g03867 805 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 281 419 - -
Tsu05g03867 805 Gene3D - 672 805 IPR015300 -
Tsu05g03867 805 SUPERFAMILY PAH2 domain 5 72 IPR036600 GO:0006355
Tsu05g03867 805 MobiDBLite consensus disorder prediction 629 654 - -
Tsu05g03867 805 Gene3D - 332 436 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03867 Tsu-Chr5 49729534 49732933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03867 9 97 WRKY Transcription Factor Family AT4G12020 35.955 2.79e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g03867 DUF313 5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03867 - - mtr:MTR_5g092880 186.037