Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03866 ATGGAGAATTCTACAAAACTGAATGAAGCATTGGAGTATCTTAAGTCAGTAGAAGTTGAATTTCAACATGATAGGATCAAGTATGATGTGTTTACAGAAGTGCTTAAAGATTACAAGGCTGAAAATATTGATATCGAAGGTATGAAAGTAAGAGTGAAAGGATTGTTTAAAGAGCATACAAATTTAATTTCGAGGTTCAATGCCTTCTTGCCCAAGGAACATCAAATAACTCCTAGGTTAGAGCTTGAAGATGGATTGGCGTTTTACAAGGCAGTAAAAGACGCGTTTCAAGATAAGAGAGAaagttttgatgaatttttaaaTCTTATGATGGATTGGAAGTACGAAAGAGTTGATATAAGAAGTTTCGTGGCACGAATGAAGGAGTTGTTTAAAGAGCATACGGATTTAATTTTGGGATTCAATCTCTTCATGCCATTTCAACTTGATGTTCCTGACACGACTTGTAATCAATTCAAAGGCGATGCTTCTCATGTTCGCTGTTCAAATAACCGCGAGTACTATGCTGCTGTTTCAGAATGCAAAGATGattttaagaaagaaagaagcaaGCGATCAAAGAGACGAGATTTTAGCAGCATTATTGAATATATCCTTGAATCAAAGAATCGCGAGGATGTTGTTGGTCGATACAATGAAGGTTGTGAGAAATTAACACCAACGAAAAGAAGAACATCAAATACATCACATAGAGTTGAGTTTGAAATTGTTGATAAGGTtaatagtgatgatgatgaaacttTTTCATCCAACGAGGgttctaagaagaatatcacAAAAAGACAAGCGAAGAATGAAAGATCAAACAAACCACTGAAGAAACgcaagatcaacaacaacaataataatgataatgaccAGCTACAAGAAGAGCGACCTGAGCTTCCATTGGTGTTTAAAGAAAAGATTGATCTGATGGAAGGTAGTGATGTGATGTTGGTGATGCAAAAGGAACTGACCATGACTGACGTGACAGAAAACAATGCTCGCTTGTCCATTCCAGAAAAACAAGTAATTAACGAGAATTTTCTAGAACCAAATGAGAAATCCTCCTTGGATTATGATCGTGAAGAGGGACGCAAGAAGCGTATTGGTATGTCTGTGTCTGTGTTGGATCCAAGTCTTAATCTCTACGATGGCATGTGCTTCAAGAAGTGGAGAATGGTGAAATCTGAAATCTACAATATCACTGGTAAATGGAACAAACTCGTAGCAAAAAATCAATTGGAAAAAGGCCAAAAGGTGCAACTCTGGTCTTTTAGAAGTGATCGACAACTCTGCTTTGCACTCGTCAAACTCTAG 1323 0.3447 MENSTKLNEALEYLKSVEVEFQHDRIKYDVFTEVLKDYKAENIDIEGMKVRVKGLFKEHTNLISRFNAFLPKEHQITPRLELEDGLAFYKAVKDAFQDKRESFDEFLNLMMDWKYERVDIRSFVARMKELFKEHTDLILGFNLFMPFQLDVPDTTCNQFKGDASHVRCSNNREYYAAVSECKDDFKKERSKRSKRRDFSSIIEYILESKNREDVVGRYNEGCEKLTPTKRRTSNTSHRVEFEIVDKVNSDDDETFSSNEGSKKNITKRQAKNERSNKPLKKRKINNNNNNDNDQLQEERPELPLVFKEKIDLMEGSDVMLVMQKELTMTDVTENNARLSIPEKQVINENFLEPNEKSSLDYDREEGRKKRIGMSVSVLDPSLNLYDGMCFKKWRMVKSEIYNITGKWNKLVAKNQLEKGQKVQLWSFRSDRQLCFALVKL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03866 440 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Tsu05g03866 440 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 188 440 - -
Tsu05g03866 440 SUPERFAMILY PAH2 domain 77 146 IPR036600 GO:0006355
Tsu05g03866 440 Pfam B3 domain-containing protein At2g31720-like 312 412 IPR005508 GO:0003677
Tsu05g03866 440 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Tsu05g03866 440 Pfam Paired amphipathic helix repeat 102 144 IPR003822 GO:0006355
Tsu05g03866 440 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 188 440 IPR005508 GO:0003677
Tsu05g03866 440 MobiDBLite consensus disorder prediction 250 300 - -
Tsu05g03866 440 MobiDBLite consensus disorder prediction 250 273 - -
Tsu05g03866 440 Gene3D - 319 440 IPR015300 -
Tsu05g03866 440 ProSiteProfiles PAH domain profile. 3 73 IPR003822 GO:0006355
Tsu05g03866 440 SUPERFAMILY PAH2 domain 3 73 IPR036600 GO:0006355
Tsu05g03866 440 SUPERFAMILY DNA-binding pseudobarrel domain 321 437 IPR015300 -
Tsu05g03866 440 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Tsu05g03866 440 Gene3D Paired amphipathic helix 84 146 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03866 Tsu-Chr5 49726166 49727618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03866 313 437 B3 DNA Binding Superfamily AT1G05930 30.952 7.83e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g03866 DUF313 2.3e-17 CL0405