Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03864 ATGGAGAATTCTACAAAACTGAATGAAGCATTGGAGTATCTTAAGTCAGTAGAAGTTGAATTTCAACATGATAGGATCAAGTATGATGTGTTTACAGAAGTGCTTAAAGATTACAAGGCTGAAAATATTGATATCGAAGGTATGAAAGTAAGAGTCAAAGGATTGTTTAAAGAGCatacaaatttaatttcaagATTCAATGCCTTCTTGCCCAAGGAACATCAAATCACTCCTAGGTTAGAGCTTGAAGATGGATTGGCGTTTTATAGGGCAGTAAAAGACGCGTTTCAAGATAAGAGAGAAAATTTTGATGAGTTTTTAAATCTTATGATGGATTGGAAGTACGAAAGAGTTGATATAAGAAGTTTCGTGGCACGAATGAAGGAGTTGCTTAAAGAGCATACGGATTTAATTTTGGGATTCAATCTCTTCCTGCTAACTAAATATCAAACCACAATTCCTTTTCAACTTGATGTTCCCGAGACGACTGGTAATCAATTCAAAGGCGATGCTTCTCGTGTTCATTGTTCAAATGACCGCGAGGATGTTGTTGTATGTGAATACAATGAAGGTTTTGAGAAATTAACACCAAAGAAAAGAAGAATATCAAATACATCACATAGAGTTCAGTTTGAAATTCTTGATAAGGTTAATAGTGATGCTGTTGAAACTTCTTCATCCGAAGAGGGTTCTATGAAGAAGATCATGAAAAGGGAAGCAAAGAATGAAAGATCAAACAAACCATTGAAGAAACgcaagatcaacaacaacaataataatgataatgaccAACTACAAGAAGAGCGGCCTGAGCTTCCATTGGTGTTTAAAGAAAAGATTGATCTGATGGAAGGTAGTAACGTGATGTTGGTGATGCAAAAGCAACTAAGAAAGAGTGACGTGACAGAAAACAATGGCCGCTTGTCCATTCCAGAAANAAACAAACCATTGAAGAAACgcaagatcaacaacaacaataataatgataatgaccAACTACAAGAAGAGCGGCCTGAGCTTCCATTGGTGTTTAAAGAAAAGATTGATCTGATGGAAGGTAGTAACGTGATGTTGGTGATGCAAAAGCAACTAAGAAAGAGTGACGTGACAGAAAACAATGGCCGCTTGTCCATTCCAGAAAAACAAGTAATTAACGAGAACTTTCTAGAACCAAATGAGAAATCATCCTTGGATTATGATCGTGAAGAGGGACGCAAGAAGCGTATTGGTATGCCAGTGTCTGTGTTGGATCCAAGTCTTAACCTCTACAATGGGATGTGCTTCAAGAAGTGGAGAATGGTGAAATCTGAAATCTACAATATCACAGGCGAATGGAACAAGCTTGTAgcaaaaaatcatttgaaaGAAGGCCAAGAGGTGCAAGTCTGGTCTTTTAGAAGTCATCATCATCTCTGCTTTGCACTCGTCAAGCTCTAG 1437 0.3521 MENSTKLNEALEYLKSVEVEFQHDRIKYDVFTEVLKDYKAENIDIEGMKVRVKGLFKEHTNLISRFNAFLPKEHQITPRLELEDGLAFYRAVKDAFQDKRENFDEFLNLMMDWKYERVDIRSFVARMKELLKEHTDLILGFNLFLLTKYQTTIPFQLDVPETTGNQFKGDASRVHCSNDREDVVVCEYNEGFEKLTPKKRRISNTSHRVQFEILDKVNSDAVETSSSEEGSMKKIMKREAKNERSNKPLKKRKINNNNNNDNDQLQEERPELPLVFKEKIDLMEGSNVMLVMQKQLRKSDVTENNGRLSIPEXNKPLKKRKINNNNNNDNDQLQEERPELPLVFKEKIDLMEGSNVMLVMQKQLRKSDVTENNGRLSIPEKQVINENFLEPNEKSSLDYDREEGRKKRIGMPVSVLDPSLNLYNGMCFKKWRMVKSEIYNITGEWNKLVAKNHLKEGQEVQVWSFRSHHHLCFALVKL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03864 478 SUPERFAMILY PAH2 domain 77 145 IPR036600 GO:0006355
Tsu05g03864 478 Pfam Paired amphipathic helix repeat 102 145 IPR003822 GO:0006355
Tsu05g03864 478 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Tsu05g03864 478 MobiDBLite consensus disorder prediction 222 270 - -
Tsu05g03864 478 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 318 478 IPR005508 GO:0003677
Tsu05g03864 478 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 215 312 IPR005508 GO:0003677
Tsu05g03864 478 Pfam B3 domain-containing protein At2g31720-like 351 450 IPR005508 GO:0003677
Tsu05g03864 478 Gene3D Paired amphipathic helix 84 145 IPR036600 GO:0006355
Tsu05g03864 478 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Tsu05g03864 478 SUPERFAMILY PAH2 domain 3 73 IPR036600 GO:0006355
Tsu05g03864 478 MobiDBLite consensus disorder prediction 302 337 - -
Tsu05g03864 478 Gene3D - 349 475 IPR015300 -
Tsu05g03864 478 ProSiteProfiles PAH domain profile. 3 73 IPR003822 GO:0006355
Tsu05g03864 478 SUPERFAMILY DNA-binding pseudobarrel domain 359 476 IPR015300 -
Tsu05g03864 478 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Tsu05g03864 478 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 215 312 - -
Tsu05g03864 478 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED 318 478 - -
Tsu05g03864 478 MobiDBLite consensus disorder prediction 230 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03864 Tsu-Chr5 49705773 49707394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03864 8 77 WRKY Transcription Factor Family AT4G12020 48.571 3.42e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g03864 DUF313 1.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03864 - K11644 mtr:MTR_5g092880 186.422