Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03863 ATGGAGTTCTCTAGTAAACTTGATGATGCGTTCGCTTTTCTTAAGCAAGTAGAAGTCGCGTTTCAACATAATAGGATCAAGTATGAAGTGTTTAGAGAAATGCTAAAAGATTACAAGGCTGGAAAAATTGATATAGGAGGTATGAAAGTAAGAGTGAAGGGATTGTTTCAAGAACATACAAATTTAATCTTGGGATTCAATGCCTTCTTGCCCAAGGAACATCAAATCATTCCTAGGTTAGAGCTTGAAGATGGATCGACGTTTTATAGGGCAGTAAAAGACGCGTTTCAAGATAAGAGAGAAAGTTTTGATGagtttttaaatattatgaTGGATTGGAAGTACGAAAGAGTTAATATAAGAAGTTTCGTGGCACGAATGAAGGAGCTGCTTAAAGAGCATAAAGATTTAACTTTGGGGTTCAATCTCTTCTTGCCAACTAAATATCAAATCACAATTCCTTTTCAACTTGATGTTCCCGAGACGACTGGTAATCAATTCAAAGATGATGCTTCTCGTGTTCGCGGTTCAAATAACCTCGGCTACTATGCTGCTGTTTCAGAATGCAAAGATAATTTTAAGAAACGAAGAAGCAAGCGATCAAAGAGACGCGATTTTAGCAACATTATTGAATATATCCTTGAATCAAAGAATCGTGAGGATGTTGTTTGTGGATACAATGAAGGTTTTGAGAAATTAACACCAAAGAAAAGAAGAATATCAAATACATCCCATAGAGTTGAGTTTGAAATTTTTGATAAGGTTAATAGTGATGCTGATGAAACTTCCGAGGGTTCTAAGAAGAAGATCACGAAAAGGGAAGTAAAGAATGAAAGATCAAACAAACCATCGAAGAAACgcaagatcaacaacaacaataatgaTAATATCCAGCTACAAGAAGAGCGTCCCGAGCTTCCATTGGTGTTTAAAGAAAAGATTGATCTGATGGAAGGTAGTGACGTGATGTTGGTGATGCAAAAGCAACTGACCAAGACTGACGTGACAGAAAACAATGGTCGCTTGTCCATCCCAGAAAAACAAGTAATTAACGAGAATTTTCTAGAACCAAATGAGAAATCTTCCTTGGATTATGATCGTGAAGAGGGACGCAAGAAGCGTATTGGTATGTCTGTGTCGGTGTTGGATCCAAGTCTTAATCTCTACGATGGTATGTGCTTCAAGAAGTGGAGAATGGTGAAATCTGAAATCTACAATATCACAGGTAAATGGAACAAACTCGTAGCAAAAAATCAATTGGAAGAAGGCCAAAAGGTGCAGCTCTGGTCTTTTAGAAGTGATCGACAACTCTGCTTTGCACTCGTCAAACTCTAG 1335 0.3663 MEFSSKLDDAFAFLKQVEVAFQHNRIKYEVFREMLKDYKAGKIDIGGMKVRVKGLFQEHTNLILGFNAFLPKEHQIIPRLELEDGSTFYRAVKDAFQDKRESFDEFLNIMMDWKYERVNIRSFVARMKELLKEHKDLTLGFNLFLPTKYQITIPFQLDVPETTGNQFKDDASRVRGSNNLGYYAAVSECKDNFKKRRSKRSKRRDFSNIIEYILESKNREDVVCGYNEGFEKLTPKKRRISNTSHRVEFEIFDKVNSDADETSEGSKKKITKREVKNERSNKPSKKRKINNNNNDNIQLQEERPELPLVFKEKIDLMEGSDVMLVMQKQLTKTDVTENNGRLSIPEKQVINENFLEPNEKSSLDYDREEGRKKRIGMSVSVLDPSLNLYDGMCFKKWRMVKSEIYNITGKWNKLVAKNQLEEGQKVQLWSFRSDRQLCFALVKL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03863 444 Pfam Paired amphipathic helix repeat 27 70 IPR003822 GO:0006355
Tsu05g03863 444 Pfam Paired amphipathic helix repeat 102 145 IPR003822 GO:0006355
Tsu05g03863 444 Pfam B3 domain-containing protein At2g31720-like 316 416 IPR005508 GO:0003677
Tsu05g03863 444 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Tsu05g03863 444 Gene3D Paired amphipathic helix 84 146 IPR036600 GO:0006355
Tsu05g03863 444 MobiDBLite consensus disorder prediction 258 289 - -
Tsu05g03863 444 SUPERFAMILY PAH2 domain 78 149 IPR036600 GO:0006355
Tsu05g03863 444 PANTHER SIN3B-RELATED 6 121 IPR039774 GO:0003714
Tsu05g03863 444 PANTHER SIN3B-RELATED 82 210 IPR039774 GO:0003714
Tsu05g03863 444 SUPERFAMILY DNA-binding pseudobarrel domain 325 441 IPR015300 -
Tsu05g03863 444 Gene3D - 323 444 IPR015300 -
Tsu05g03863 444 MobiDBLite consensus disorder prediction 258 300 - -
Tsu05g03863 444 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Tsu05g03863 444 PANTHER PROTEIN, PUTATIVE-RELATED 6 121 - -
Tsu05g03863 444 PANTHER PROTEIN, PUTATIVE-RELATED 82 210 - -
Tsu05g03863 444 SUPERFAMILY PAH2 domain 6 73 IPR036600 GO:0006355
Tsu05g03863 444 ProSiteProfiles PAH domain profile. 3 73 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03863 Tsu-Chr5 49699561 49701048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03863 317 441 B3 DNA Binding Superfamily AT1G05930 31.746 1.14e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu05g03863 DUF313 3.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03863 - - mtr:MTR_5g092880 226.098