Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03861 ATGCCCTCAGCTCAAGATCCATTTTACGTTGTCAAAGAAGATATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAAAACACTTCTGATAGTGGAGAGCATTTGAACCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGgTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTTGAGATTGAAAACCGGAGGAGGTGGACCAGCAATGCTCGCACTCAGGTGCGCACAGTTAAGAAAACAGTGGAAGCTGGTAAGGGATCAAATACAGCAACTCATGCTAGTATAAATGGGATGCATAGGGAATTAATGAGGCTTCCAGATTCTCATCAAAGTACGTCCAAGTCTAACCAATATTCTGCTGGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAAATGCTTCTTATAAAAAAGCAGGATGAGGAGTTAGATGAGCTTAGTTTAAGTGTACAAAGAATCGGAGGTGTTGGACTTACAATACATGAAGAGCTCCTTGGCCAGGAAAAAATTCTAGATGAACTTGGCAATGAGATGGACAGTACATCCAATCGTTTAGATTTTGTCCAAAAAAGAGTGGCGATGGTGATGAAGAAGACGAGTGCAAAGGGTCAGATCATGATGATATGTGCCTTCCAATCTCCCTCTGCAGACTATAGTTGCTTGAGAGTTAATCACAAAGGAAGTGTACATATGGTTGATATTCAGATCCCAAGCACGTTCGATCCATTTGCGGAAGCTAAAGAGTCGGATGCACCGGGTACAAAAGAGTACGTGCATATTCGCATACAACAAAGGAATGGAAAGAAGAGCCTAACGACGGTTCAAGGGCTGAAAAAGGAGTTCAGCTATGAGAAGATCTTAAAAGATCTCAAGAAAGAGTTTTGTTGCAATGGAAATGTTGTGAATTGTAAGGATCTTGGCAAGATTATTCAACTCCAAGGCGATCAACGCAAGAATGTTTCTCACTTTCTTGTTCATGCTAATCTTGTCAGAAAGGACAGCATCAAGATTCATGGTTTTTGA 1089 0.405 MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDSGEHLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTSNARTQVRTVKKTVEAGKGSNTATHASINGMHRELMRLPDSHQSTSKSNQYSAGDNDDFIESESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKTSAKGQIMMICAFQSPSADYSCLRVNHKGSVHMVDIQIPSTFDPFAEAKESDAPGTKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVNCKDLGKIIQLQGDQRKNVSHFLVHANLVRKDSIKIHGF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03861 362 SUPERFAMILY SNARE fusion complex 153 217 - -
Tsu05g03861 362 PANTHER SYNTAXIN 1 240 IPR045242 -
Tsu05g03861 362 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Tsu05g03861 362 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 255 362 IPR005874 GO:0003743
Tsu05g03861 362 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Tsu05g03861 362 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 155 217 IPR000727 -
Tsu05g03861 362 Gene3D - 242 362 - -
Tsu05g03861 362 Coils Coil 12 32 - -
Tsu05g03861 362 CDD eIF1_SUI1 278 361 IPR005874 GO:0003743
Tsu05g03861 362 PANTHER SYNTAXIN PROTEIN 1 240 - -
Tsu05g03861 362 ProSiteProfiles Translation initiation factor SUI1 family profile. 280 350 IPR001950 GO:0003743|GO:0006413
Tsu05g03861 362 SUPERFAMILY eIF1-like 253 362 IPR036877 GO:0003743|GO:0006413
Tsu05g03861 362 CDD SNARE_Qc 158 215 - -
Tsu05g03861 362 Gene3D - 2 104 - -
Tsu05g03861 362 Gene3D - 162 226 - -
Tsu05g03861 362 Pfam Translation initiation factor SUI1 277 348 IPR001950 GO:0003743|GO:0006413
Tsu05g03861 362 Coils Coil 193 213 - -
Tsu05g03861 362 SMART tSNARE_6 150 217 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03861 Tsu-Chr5 49680942 49688104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03861 55 231 SNARE and Associated Proteins AT1G28490 70.056 6.37e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03861 K08500 - gmx:100793612 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03861 05 49680942 49688104 Tsu05g03861 05 49680942 49688104 ECH
Tsu03g01292 03 12369161 12369499 Tsu05g03861 05 49680942 49688104 PCT