Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03858 ATGGGTGGTTGTATGAGTAAAAGAGAATCAGAACCACAACAAAGACATATTGTTGCTGTTTCTGGTAggcataatcataatcataatcataatcacaaTCATAATCGAACAAAATCCCCTTATCAACAACCTAACAAACATGCCCCAAGAAGTCCAGTACCAAATGTTCAAAGACCAATTACAAACACAATCCTAGGTAAAAAATTTGAGGATGTGAGAAAAAGTTACACACTTGGTAAAGAATTAGGGAGAGGACAATTTGGTGTGACTTATCTATGTACTGAGAATTCAACAGGTTTGAAATATGCATGCAAATCAATTTCTAAGAGGAAACTTGTTAGTAAAGCTGATAAAGAAGATATTAAGAGAGAGATTCAAATTATGCAACATATGAGTGGACAATCAAGTATTGTTGAGTTTAAAGGTGCTTATGAGGATAAAAATTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGGAAATATAGTGAAAGAGCTGCAGCTTCAATTTGTAGACAAATTGTTAATGTTGttcatatttgtcattttatggGTGTCATGCATAGAGATTTGAAGCCTGAAAATTTCTTGTTGTCTAGTAAGGATGATAAGGCTACTATCAAGGCCACTGATTTCGGCTTGTCGGTTTTCATCGAAGAAGGAAAGATACACCGAGATGTAGTTGGAAGTGCTTATTATGTTGCGCCTGAAGTTCTACGTCGTAAATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTTGCGGTGTGCCTCCATTTTGGGCAGACACGGAAAAGGGAATATTTGATGCCATATTGTACGGTCATATTGACTTTGAAAGTCGTCCATGGCCAAGCATATCAAACAGTGCTAAGGACCTCGTCCGTCAGATGCTTACACAAGATCCAAAGAAACGCATTACTTCTTCTCAGGTTCTAGAACATCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACCAGCCAATAGACAGTGCAGTACTTTCCAGAATGAAGCAATTCAGAGCAAtgaataaactaaaaaaactcGCCCTCAAGGTCATTGCTGAAAATCTTTCTTCAGAAGAGATTCAAGGTTTGAAGGCGATGTTTACAAACATGGACACAGACAAAAGTGGTACAATCACATTTGAGGAGTTGAGGGCCGGATTGCAAAGACTCGGCTCGACGCTTACTGAAGCCGAAGTGCGACAGCTTATGGAAGCTGCCGATGTAGATGGAAATGGATCAATTGACTACATAGAATTCATCACTGCAACAATGCATAGACATAGGTTAGAAAGAGATGAACATCTTTACATGGCCTTCCAATATTTTGATAAAGACAATAGCGGTTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATACGACATGGGTGACGAAGACACTGTCAGGGAAATTATATCCGAAGTTGATACCGATAATGATGGTAGAATTAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAGTCCAACAACAAGTCACACTATtctaa 1575 0.3683 MGGCMSKRESEPQQRHIVAVSGRHNHNHNHNHNHNRTKSPYQQPNKHAPRSPVPNVQRPITNTILGKKFEDVRKSYTLGKELGRGQFGVTYLCTENSTGLKYACKSISKRKLVSKADKEDIKREIQIMQHMSGQSSIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGKYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKATIKATDFGLSVFIEEGKIHRDVVGSAYYVAPEVLRRKYGKEIDIWSAGVILYILLCGVPPFWADTEKGIFDAILYGHIDFESRPWPSISNSAKDLVRQMLTQDPKKRITSSQVLEHPWLKEGGNASDQPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSSEEIQGLKAMFTNMDTDKSGTITFEELRAGLQRLGSTLTEAEVRQLMEAADVDGNGSIDYIEFITATMHRHRLERDEHLYMAFQYFDKDNSGFITRDELETAMKEYDMGDEDTVREIISEVDTDNDGRINYEEFCAMMRSGVQQQVTLF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03858 524 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Tsu05g03858 524 Gene3D Transferase(Phosphotransferase) domain 1 162 341 - -
Tsu05g03858 524 SMART efh_1 453 481 IPR002048 GO:0005509
Tsu05g03858 524 SMART efh_1 488 516 IPR002048 GO:0005509
Tsu05g03858 524 SMART efh_1 381 409 IPR002048 GO:0005509
Tsu05g03858 524 SMART efh_1 417 445 IPR002048 GO:0005509
Tsu05g03858 524 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Tsu05g03858 524 SUPERFAMILY EF-hand 358 514 IPR011992 -
Tsu05g03858 524 SUPERFAMILY Protein kinase-like (PK-like) 54 355 IPR011009 -
Tsu05g03858 524 SMART serkin_6 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03858 524 Pfam Protein kinase domain 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03858 524 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Tsu05g03858 524 MobiDBLite consensus disorder prediction 36 58 - -
Tsu05g03858 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 518 - -
Tsu05g03858 524 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03858 524 Gene3D - 342 517 - -
Tsu05g03858 524 CDD EFh_PI-PLC 382 515 - -
Tsu05g03858 524 Pfam EF-hand domain pair 382 442 IPR002048 GO:0005509
Tsu05g03858 524 Pfam EF-hand domain pair 452 514 IPR002048 GO:0005509
Tsu05g03858 524 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Tsu05g03858 524 MobiDBLite consensus disorder prediction 24 58 - -
Tsu05g03858 524 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Tsu05g03858 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Tsu05g03858 524 CDD STKc_CAMK 76 333 - -
Tsu05g03858 524 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Tsu05g03858 524 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Tsu05g03858 524 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 31 518 - -
Tsu05g03858 524 ProSiteProfiles EF-hand calcium-binding domain profile. 449 483 IPR002048 GO:0005509
Tsu05g03858 524 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
Tsu05g03858 524 CDD EFh 457 514 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03858 Tsu-Chr5 49666585 49670489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03858 61 524 EF-hand Containing Proteins AT3G20410 80.901 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu05g03858 Pkinase 1.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03858 K13412 - gmx:100794852 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03858 05 49666585 49670489 Tsu05g03858 05 49666585 49670489 ECH