Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03857 ATGACCAAATGGTTTTGTGGAACAATAGAAGCAATAAATAAGTGTAAAGAAGTTCTTTCTTTAAGGGTGTTGAGTGACATTGGTTGTTCTGCATTTGAGAAATTCATGAAAGTTATGCAGAGAGTTCTTTTTGCTGCATTTACTTGTATTATAGCATTAGGAGGATCAATAATAGGAACAATAGCAGGAGCTATCAAAGGACAGACAACAGAATCTGGTTTTCTTGATGGAGCTGGAAAAGGAGCAATTGCAGGAGCTATTGCAGCCATAGAATTGATGAGTTTTACTTCTGTTGAGCCATTTTCCAAGGTTGCTTTGTTGAGAAGTTTATTAAATGGTAAAGTGTTTATGGAATGGATATGTCCAACTGTTGCACAAGCTTATCTATTTTATATTAATTCActagaaacaacttatggagGACTGTTTTCAGATATTTATGACAACATGGGAGGAGTTAAGGGTATGTCCCAAAGTTGTATTATGAAGCTTCCATTTCAACAATTCAGTTccaacaaaatgatgaaattatACAATGAATCATGCTGCTCAATTTGCTGCCAGGATTTTGAGGATGGAGAATTAGTCAGAACACTTCCAAAATGTTGCCACATTTTTCATTTAGAATGCATTGACAAGTGGCTTGTTCAACAAGGATCATGTCCTATTTGTAGAACTTATGTTCCAGACCACATTCATGAATAG 705 0.3362 MTKWFCGTIEAINKCKEVLSLRVLSDIGCSAFEKFMKVMQRVLFAAFTCIIALGGSIIGTIAGAIKGQTTESGFLDGAGKGAIAGAIAAIELMSFTSVEPFSKVALLRSLLNGKVFMEWICPTVAQAYLFYINSLETTYGGLFSDIYDNMGGVKGMSQSCIMKLPFQQFSSNKMMKLYNESCCSICCQDFEDGELVRTLPKCCHIFHLECIDKWLVQQGSCPICRTYVPDHIHE 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03857 234 CDD RING-H2_PA-TM-RING 182 225 - -
Tsu05g03857 234 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Tsu05g03857 234 Pfam Ring finger domain 183 225 IPR001841 -
Tsu05g03857 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 228 IPR044523 -
Tsu05g03857 234 SMART ring_2 183 224 IPR001841 -
Tsu05g03857 234 SUPERFAMILY RING/U-box 176 230 - -
Tsu05g03857 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 231 IPR013083 -
Tsu05g03857 234 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03857 Tsu-Chr5 49650601 49652454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03857 43 228 C3H Transcription Factor Family AT5G66070 37.056 1.79e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03857 - K19041 gmx:100305612 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03857 05 49650601 49652454 Tsu05g03857 05 49650601 49652454 ECH