Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03855 ATGGAAGATTCCTCGTTTTTAGACCGGATGATTGGTCATCTTCGAGGAACTTGCAAGTACTATACTGGTTATCCAAAGGATCTTCGACCGTCACGGGTTATTCATTTTAATTCCGAGCGCGATTTTATCGATCTCCTTCATGAAGGGTTTCCTGTGGTTGTTGCTTTTACTATCAGGAGCAATTACACAGAACATCTTGACAAAGTATTACAAGAAGCTGCTGCTGAGTTTTATCCACACGTAAAGTTTATGCGTGTCGAATGTCCAAAATATCCTGGATTTTGTATAAGTCGGCAGAAAAAGGAGTATCCATTCATTGAAATATTTCATAGTCCGACACATGTTGCTAACCAGGGAAGGGTAGCTGATCCAAATATTACTAAATACAATGTGAAAGTCATGCCTTTCAACTACGATGTCAGTCCATATGGATTTAGAGAAATCTTCAAGCGCTATGTCGTGTTCAAGTTATTAGTTATCATCATGGAAGGTGTTGTTGTGAGAAGGGTTATTCCTTCTGATAACAGTTGTCTATTTAATGCAGTTGGATATGTTATGGATCGTGACCAAACCAAAGCTGCTGAGTTGAGACagGTTATAGCTGCAACAGTAGCAAGTGATCCCGAGAAATATTCTGAAGCATTTCTTGGGAAGCCAAATCCAGAGTATTGTAACTGGATTCTTGACCCAGAAAAGTGGGGAGGTGCAATTGAACTTTCAATATTAGCAGATTATTATGGACGCGAGATTGCAGCATATGATATTCAGACAACGCGGTGTGATTTGTATGGTCAGGAAGGTAACTATTCTGAAAGGGTGATGCTGATTTATGATGGTCTTCACTACGATGCTTTAGCTATGTCTCCTGTTGAAGGAGCTCCCGAGGATTTTGATCAGACCATATTTGCGATACAAAATAACAGAAGCATTGGACCTGTCGAGGAGATTGCTCTAACTTTTATTAAAGACCAACATAGGAAACGGAAATTCACCGACACTGCCAACTTCACTCTGCGCTGTGGTGTATGCCAAATTGGAGTTATTGGTCAGAAGGAAGCAGCGGAGCATGCTCAAGCAACCGGTCATGTTAACTTTCAAGAATATAGATGA 1110 0.4045 MEDSSFLDRMIGHLRGTCKYYTGYPKDLRPSRVIHFNSERDFIDLLHEGFPVVVAFTIRSNYTEHLDKVLQEAAAEFYPHVKFMRVECPKYPGFCISRQKKEYPFIEIFHSPTHVANQGRVADPNITKYNVKVMPFNYDVSPYGFREIFKRYVVFKLLVIIMEGVVVRRVIPSDNSCLFNAVGYVMDRDQTKAAELRQVIAATVASDPEKYSEAFLGKPNPEYCNWILDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEGNYSERVMLIYDGLHYDALAMSPVEGAPEDFDQTIFAIQNNRSIGPVEEIALTFIKDQHRKRKFTDTANFTLRCGVCQIGVIGQKEAAEHAQATGHVNFQEYR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03855 369 Pfam OTU-like cysteine protease 173 268 IPR003323 -
Tsu05g03855 369 ProSiteProfiles OTU domain profile. 166 288 IPR003323 -
Tsu05g03855 369 SUPERFAMILY Thioredoxin-like 30 121 IPR036249 -
Tsu05g03855 369 Gene3D - 155 334 - -
Tsu05g03855 369 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 130 367 IPR039138 GO:0004843|GO:0016579|GO:0030433|GO:0101005
Tsu05g03855 369 PANTHER UBIQUITIN THIOESTERASE OTU1 130 367 - -
Tsu05g03855 369 SUPERFAMILY Cysteine proteinases 146 285 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03855 Tsu-Chr5 49626800 49641299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03855 162 369 C2H2 Transcription Factor Family AT1G50670 79.808 1.33e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03855 K13719 - gmx:100793701 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03855 05 49626800 49641299 Tsu05g03855 05 49626800 49641299 ECH