Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03850 ATGAGTGTAGTAGGGTTTGATATTGGAAATGAGAATTGTGTAATTGCTGTAGTGAAGCAAGGTGGGGTTGATGTTTTGTTGAATGATCAATCGAACCGCGAAACCCCTGCTATCATTTGCTTCGGAGAGAAGCAACGGTTTTTAGGGTCTGCTGGTGCTGCTTCTGCTATGATGCACCCGAAATCCACAGTATCTCAAGTCAAGAGTCTAATAGGAAAGAGATATGATGACCCTGATGTTCAAAATGACCTAAAAATGCTCACTGTTGAAACTTTGGAAGGTTCGGGTGGTGGCATTTTGATTCACTTGGAATACTTAAAGGAGGATCATAAGTTTATGCCGGTTCAAATATTAGCAATGCTCTTTGCTCATTTGAAGGCTATAGCTGAAAATGATCTGGGGACCACTGTTTCGGAGTGTGTTATCGGAGTTCCATTATACTTTACTGACTTGCAGAGACGAGAATATCTCGACGCGGCAACAATTGTTGGGTTGAATCCTTTGAAGTTGATTCATGATTGCACTGCAATAGGTCTTGGTTATGGTGTTTACAAAACAGATTTTCCTGATGGAGATCCTATTTATGTTGCCTTTATTGACATAGGCCACTGCGATACTCAGGTCGCTATTGCAGAATTTCAGGCAGCGAAAATGAAGATTCTTTCACATACTTTCGATAGTAGCTTAGGGGGTAGAGACTTTGATGAGGTTCTATTTAGACATTTCGCCGAAACATTTAAGGAACAGTATGACATTGACGTGTATTCTAACGACAAAGCTTGTAATAGGCTGCGTGCGGCATGTGAGAAGTTGAAGAAAGTTTTGAGTGCAAATTTAGAGGCACCTCTTAACATCGAGTGTTTGATGGATGAAAAAGATGTTAGTGGATTTATCAAGAGGGAAGAATTCGAGAATTTGGCTTCAGGGTTATTGGAGAGAATTTCTATTCCTTGCAATAGAGCATTGGCTGACGCGGGCTTGAGCGTTGATAAGATTGATTCTGTCGAGTTAGTTGGTTCAGGTTCAAGAATTCCAGCTATAACTAGATTATTAACCTCTCTATTTGAGAAAGAACTCAGCCGAACACTGAATGCAAGCGAGAGCGTAGCTCGCGGTTGTGCTCTTCAATGTGCAATGCTCAGTCCTGCTTCCCGAGTCAAAGAATACGAGGTCGAGGATTCTACTCCTTTTTCTATCGGACTTTCCTCGGACGAAGGTCCAATTTGTGAAAAATCAAATGGTATACTTTTCCCAAAAGGTGAACCGTTTCCAAGTTCTAAAACTATCACGTTACAGGGCAGTAAATTGCTTCGTTTGGAAGCTGTCTATCCTATTCTACATGAATTACCAAAGGGGATATCTCCTAAAATTAGTTGCTACACGATTGGTCCTTTACATGAATCTGATGGAAGTAAGGCAGTAGTTGAAGTTATATTTCAACTAAATCTGCACGGCAATCTCAGTATCGAATCATCTACATTGATCGAGAATCATGTGGAAGATTCTGTTACAACGCGTGATAATCATTCAAATTCTGACACAATGGATGTTGAGCCCACTTCTGAGCCTATTTCTGAGCCCATTTCTGAGACAGATCAAAATGTCAATGCACATAGTATCAATCAGAAGAGTGAATCTCTACATACTTCTTCTGATGGTACAGGAAAGGATAAAGCCGAAAGAAGGCTTAATTTATCAGTAAGTGAGACCATCTTCGGTGGAATGACCGGTGCTGAACTCGTGGAAGCTCGAGAAAAAGAACGTCAGTTAATCCAGCAGGATGTAGCAATGGAGTTAACCAAAAACAAGAAGAACACTTTGGAGGCATACGTCTACGACACGAGGAATAAGCTCATAAACGAATACCGTAATTTTGCAAGTGAACAAGAGAAGGATGAAATATCCAGGAGCCTCGAAGAGACTGAGAAATGGCTTTATAATGAAGGCAATGATGAAACAATACAtacctattttgaaaaactcgaAGATCTAAAACagCTGGTGGATCCAGTCGACAACCGGTACAAAGACGAAGAAGCGAGAGTACAATCTACGAGAGATTTATTAGGTTACATCGTTGAGCATCGCATGTCTACAGATTCTCTTTCACCTGAAAGTAAAGAACAGATCATCAACGAGTGTAACAAAGCAGAAAAATGGCTAAGAGACAAGAGACAACATCAAGATGCTTTGCCTAAGTGCGCTGATCCAGTAATTTGGTCAAGGGACATCGATAGCAGGACAAAAGAATTAAACACAGCATGCCATAAGATATTGGCATCAATGAAGACAATTCCAGTTACAGCTCCAGCTCCAGCTCCAGTTCCAGATCCAGATCCAGAAGACAACGAGTAA 2355 0.4059 MSVVGFDIGNENCVIAVVKQGGVDVLLNDQSNRETPAIICFGEKQRFLGSAGAASAMMHPKSTVSQVKSLIGKRYDDPDVQNDLKMLTVETLEGSGGGILIHLEYLKEDHKFMPVQILAMLFAHLKAIAENDLGTTVSECVIGVPLYFTDLQRREYLDAATIVGLNPLKLIHDCTAIGLGYGVYKTDFPDGDPIYVAFIDIGHCDTQVAIAEFQAAKMKILSHTFDSSLGGRDFDEVLFRHFAETFKEQYDIDVYSNDKACNRLRAACEKLKKVLSANLEAPLNIECLMDEKDVSGFIKREEFENLASGLLERISIPCNRALADAGLSVDKIDSVELVGSGSRIPAITRLLTSLFEKELSRTLNASESVARGCALQCAMLSPASRVKEYEVEDSTPFSIGLSSDEGPICEKSNGILFPKGEPFPSSKTITLQGSKLLRLEAVYPILHELPKGISPKISCYTIGPLHESDGSKAVVEVIFQLNLHGNLSIESSTLIENHVEDSVTTRDNHSNSDTMDVEPTSEPISEPISETDQNVNAHSINQKSESLHTSSDGTGKDKAERRLNLSVSETIFGGMTGAELVEAREKERQLIQQDVAMELTKNKKNTLEAYVYDTRNKLINEYRNFASEQEKDEISRSLEETEKWLYNEGNDETIHTYFEKLEDLKQLVDPVDNRYKDEEARVQSTRDLLGYIVEHRMSTDSLSPESKEQIINECNKAEKWLRDKRQHQDALPKCADPVIWSRDIDSRTKELNTACHKILASMKTIPVTAPAPAPVPDPDPEDNE 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03850 784 Gene3D - 5 374 - -
Tsu05g03850 784 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 578 674 IPR029048 -
Tsu05g03850 784 Gene3D - 38 113 - -
Tsu05g03850 784 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 541 IPR029047 -
Tsu05g03850 784 CDD HSPA4_like_NDB 2 381 - -
Tsu05g03850 784 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Tsu05g03850 784 SUPERFAMILY Actin-like ATPase domain 192 381 IPR043129 -
Tsu05g03850 784 Gene3D - 186 360 - -
Tsu05g03850 784 PANTHER HSC70CB, ISOFORM G-RELATED 1 761 - -
Tsu05g03850 784 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 761 - -
Tsu05g03850 784 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 608 IPR029047 -
Tsu05g03850 784 Pfam Hsp70 protein 3 675 IPR013126 GO:0005524|GO:0140662
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 332 348 - -
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 30 42 - -
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 363 383 - -
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 388 407 - -
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 2 15 - -
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 472 488 - -
Tsu05g03850 784 PRINTS 70kDa heat shock protein signature 140 160 - -
Tsu05g03850 784 MobiDBLite consensus disorder prediction 501 560 - -
Tsu05g03850 784 MobiDBLite consensus disorder prediction 514 549 - -
Tsu05g03850 784 Gene3D - 576 686 IPR029048 -
Tsu05g03850 784 Gene3D Actin; Chain A, domain 4 230 313 - -
Tsu05g03850 784 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 699 763 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03850 Tsu-Chr5 49591063 49594935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03850 4 427 Calmodulin-binding Proteins AT3G09440 33.489 2.14e-74 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03850 K09489 - gmx:100795914 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03850 05 49591063 49594935 Tsu05g03850 05 49591063 49594935 ECH