Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03848 ATGGCGGACATGGAACGTCTTGTTATTGAAATTAGCAAACCTGATCTCCGAGAAAATGCAATTCGTGAGCTCTCAAAGaTGAATGAGTTATTTAAAGAACTGGCCATTTTATTGTGGAATTCTTATAGGACTATTTCTGTACTTTTACAGGAAATAATTTCAATATATCCTAATATTTCACCCGAGTCTCTTACCTCCGCACAATCAACTCGAGTGTGTAATcaaaatttaaagaaaaagtgTATTAGCCTATATATATCCATTATTTACACTTACCTTTTCTCATATGCAGCTAAGCTACCTCTGTATTTGTATCCTTTCCTTGATACGACAAACAATTTGCCACAATTTGAGAATTTGAGGCTTGCTAGCCTTAGAGTCATTGGTGCATTGGTGGAGtatttttaTTGTATCATCACTCACACCCAATCGATGGACAATTTACTTCCTCAATCGCTCTCAATGACAAACAGTGTGTCGTCTGTAGCTCCTCTCCGTGTTTCTGTCCAATCTAGCTCCACTATCGATTGGATGGCGTACATGGAATGTCTTGTTATTGAACTCAGCAATCCTGATCTTAGAGAAAATGCTGATCTTAGAGAAAATGCTATCCGTGTGCTTTCCAAGAGGAAAGAATTATTTTATGAACTTGCACCTTTATTGTGGAATTCTGATGGTACTATTGCAGTGCTTTTACAGGAAATAGTTTTAATATATCCTAATCTTTCACCACCAACTCTTTCTCCTGCACAAGCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTTTGGCATCTCACCCTAATACAAGGATGTCACTCATCAATGCTCACATACCTATATATGTGTACCCTTTCCTTGAAACGACAAGTACCTTACCACATTTTGACTATTTGAGGGTTGCGAGTCTCGACGTCATTGGTACCTTAGTGAAGGCTAATAGCAAAGAAGTtatactttttcttctttcaactGAGATTATTCCATTATGCTTGCGCAGTATGGAAATTGGCAAGGAATTGTCCAAAAATGTTGCAACTTTCATCCTACAAAAAATTTTGTTCGATGAAGATGGTTTAGCTTATGTTTGTGCTACAGCAGATCGCTTCTTTGCTGAAGACCCAGCAACTTGGAGGTGGGCAGAGCAATTGTATGAAAATATAAGGGAGAATCAAGTTCACATCATCAGGACAGGATAA 1203 0.3724 MADMERLVIEISKPDLRENAIRELSKMNELFKELAILLWNSYRTISVLLQEIISIYPNISPESLTSAQSTRVCNQNLKKKCISLYISIIYTYLFSYAAKLPLYLYPFLDTTNNLPQFENLRLASLRVIGALVEYFYCIITHTQSMDNLLPQSLSMTNSVSSVAPLRVSVQSSSTIDWMAYMECLVIELSNPDLRENADLRENAIRVLSKRKELFYELAPLLWNSDGTIAVLLQEIVLIYPNLSPPTLSPAQATRVCNVLALLQCLASHPNTRMSLINAHIPIYVYPFLETTSTLPHFDYLRVASLDVIGTLVKANSKEVILFLLSTEIIPLCLRSMEIGKELSKNVATFILQKILFDEDGLAYVCATADRFFAEDPATWRWAEQLYENIRENQVHIIRTG 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03848 400 Pfam Cell differentiation family, Rcd1-like 196 373 - -
Tsu05g03848 400 Pfam Cell differentiation family, Rcd1-like 7 133 - -
Tsu05g03848 400 Gene3D - 1 169 IPR011989 -
Tsu05g03848 400 Gene3D - 172 374 IPR011989 -
Tsu05g03848 400 PANTHER UNCHARACTERIZED 143 385 - -
Tsu05g03848 400 PANTHER UNCHARACTERIZED 1 133 - -
Tsu05g03848 400 SUPERFAMILY ARM repeat 14 365 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03848 Tsu-Chr5 49556170 49573943 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Tsu05g03848 Rcd1 4e-76 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03848 K12606 - cpap:110811830 275.018