Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03812 ATGTGCATGAAGAGACGCACGGGAACTCTCTCCACCATCATCGCCGGCGTCGCCCACCCTTCCCATAGCCACCATCGTCATAACACCGCACCAGTCACTCTCAATCGTCTAACAAAGcACAATATCGTGAGAGAGATGGAGAAAATAGGAGTAGTATTATCCGCGAAAGAGGCATTTGAGAAGCTAGAGAAAGTCGGAGAAGGAACATACGGAAAGGTTTACAGAGCAAGAGAGAAAGCTACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTTCATGAGGACGATGAAGGTGTTCCTCCTACTACTCTTCGCGAGGTTTCGATTTTGCGAATGCTCTCTCGTGATCCACATGTTGTTAGGTTATTGGATGTGAAACAAGGTCAGAACAAGGAAGGGAAAACTGTGCTTTACTTGGTTTTCGAGTACATGGATACCGATCTCAAGAAATTCATTCGTACTTTTCGTCAAACTGGACAAAATATCCCACCTCCAGTCATCAAAGGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCATGGCCATGGAATATTGCATAGGGATTTGAAGCCTCACAATCTCTTGATGGACCGGAAAACAATGATGCTCAAAATTGCTGATCTTGGACTTGCTAGAGCATTTACTGTGCCTCTTAAGAAGTACACTCATGAGATACTGACCCTGTGGTATAGAGCTCCTGAAGTCCTTTTGGGGGCTACCCATTACTCAATGGCTGTCGACATATGGTCTGTTGCATGCATTTTCGCTGAACTTGTCACCAAGCAAGCACTATTTCCTGGTGATTCTGAGCTGCAACAACTCCTCCACATATTCAGGCTGTTGGGGACTCCTAATGAAGATATGTGGCCAGGTGTTAGTAAGCTAATGAACTGGCATGAGTATCCTCAGTGGAGCCCTCAAAGTCTTTCAAAGGCTGTTCCTACTTTGGAAGAGGCTGGAGTGGATCTACTCGCTcAAATGCTGCAATATGAACCTGCCAAGCGGATTTCTGCAAAGAAAGCAATGGAACATCCTTACTTTGATGACCTGGACAAGACCAATCTTTAG 1074 0.4544 MCMKRRTGTLSTIIAGVAHPSHSHHRHNTAPVTLNRLTKHNIVREMEKIGVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRTFRQTGQNIPPPVIKGLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPLKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEDMWPGVSKLMNWHEYPQWSPQSLSKAVPTLEEAGVDLLAQMLQYEPAKRISAKKAMEHPYFDDLDKTNL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03812 357 Gene3D Transferase(Phosphotransferase) domain 1 147 356 - -
Tsu05g03812 357 PANTHER - 30 356 - -
Tsu05g03812 357 Pfam Protein kinase domain 59 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03812 357 PANTHER CELL DIVISION PROTEIN KINASE 30 356 - -
Tsu05g03812 357 SUPERFAMILY Protein kinase-like (PK-like) 56 352 IPR011009 -
Tsu05g03812 357 Gene3D Phosphorylase Kinase; domain 1 54 145 - -
Tsu05g03812 357 ProSiteProfiles Protein kinase domain profile. 59 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03812 357 SMART serkin_6 59 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g03812 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Tsu05g03812 357 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03812 Tsu-Chr5 49287934 49291299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03812 46 357 Core Cell Cycle Gene Families AT1G20930 83.810 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Tsu05g03812 Pkinase 1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03812 K07760 - gmx:100808302 585.104