Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03804 ATGGGGAAAAATGACTTTCTCACACCTAAGGCAATTGCCAACCGAATCAAAGCAAAAGGGCTGCAGAAACTTCGGTGGTATTGCCAAATGTGCCAGAAGCAGTGTCGTGATGAAAATGGTTTCAAATGCCATTGTATGAGTGAAGGACACCAACGTCAAATGCAAATTTTTGGACAAAACCCAACCCGCATAATTGAGGGCTATACTGAAGAGTTTGAAACAACTTTTCTTGAGCACATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCGACTGTAGTTTATAatgaatatataaatgataGAAACCATGTTCATATGAACTCCACGGAGTGGGCTACACTTACTGAGTTTGTTAAGTATTTGGGTCGAACTGGAAAGTGTAAGGTTGAAGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACTCTTTTcaaggagaagatgaagaataagAGAGCCAAGGCAGATTTGGTAGATGAAGAAAAGCAAGAGAAGGAGATCCAGAAACAGATTGAAAGGGCTGAGCAAATGATGCAGCAATCTAATCCCGAGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAAGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGAAAAAAGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTCAGAGTTGATCAAGAAGAGCTTGAAACTGTGATACCACAGGTTGGGGGCCGTGTGAAAATAGTCAACGGGGCTTATCGTGGATCACTTGCTAGGTTACTGGGGGTGGATACAGATCGTTTTTGCGCTAAGGTGCAGATAGAGAAAGGTGCTTATGATGGCAGGGTGCTTAAAGCTGTGGAATATGAGGACATTTGTAAAGTAGCCTAA 927 0.4099 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRAKADLVDEEKQEKEIQKQIERAEQMMQQSNPEKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVKKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKVA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03804 308 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Tsu05g03804 308 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Tsu05g03804 308 SMART Kin17_mid_2 52 178 IPR019447 -
Tsu05g03804 308 CDD KOW_KIN17 254 307 IPR041995 -
Tsu05g03804 308 Gene3D - 198 251 - -
Tsu05g03804 308 Coils Coil 154 186 - -
Tsu05g03804 308 Pfam KN17 SH3-like C-terminal domain 191 243 IPR041330 -
Tsu05g03804 308 Gene3D - 252 308 IPR014722 -
Tsu05g03804 308 PANTHER BNAA05G13760D PROTEIN 190 308 - -
Tsu05g03804 308 PANTHER BNAA05G13760D PROTEIN 1 188 - -
Tsu05g03804 308 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 190 308 IPR037321 -
Tsu05g03804 308 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 188 IPR037321 -
Tsu05g03804 308 Gene3D - 60 160 IPR038254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03804 Tsu-Chr5 49246668 49248080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g03804 191 308 C2H2 Transcription Factor Family AT1G55460 84.746 3.05e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03804 K13102 - aof:109819652 502.286